Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05610 336 / 6e-118 Alfin AL1 alfin-like 1 (.1.2) AT3G11200 322 / 2e-112 Alfin AL2 alfin-like 2 (.1.2) AT3G42790 276 / 4e-94 Alfin AL3 alfin-like 3 (.1) AT5G20510 258 / 7e-87 Alfin AL5 alfin-like 5 (.1) AT1G14510 248 / 3e-83 Alfin AL7 alfin-like 7 (.1) AT2G02470 246 / 4e-82 Alfin AL6 alfin-like 6 (.1.2) AT5G26210 229 / 2e-75 Alfin AL4 alfin-like 4 (.1) AT2G40770 47 / 5e-06 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) AT4G22140 42 / 0.0001 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT5G35210 42 / 0.0002 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188100 [exp] 421 / 2e-151 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.016G116900 [exp] 343 / 6e-121 AT5G05610 305 / 1e-105 alfin-like 1 (.1.2) Potri.006G100900 [exp] 335 / 2e-117 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2) Potri.018G050200 [exp] 278 / 1e-94 AT5G20510 343 / 4e-120 alfin-like 5 (.1) Potri.006G223500 [exp] 271 / 3e-92 AT5G20510 327 / 5e-114 alfin-like 5 (.1) Potri.006G145300 [exp] 259 / 1e-87 AT5G20510 311 / 1e-107 alfin-like 5 (.1) Potri.003G044700 [exp] 255 / 6e-86 AT2G02470 363 / 3e-128 alfin-like 6 (.1.2) Potri.004G230500 [exp] 251 / 2e-84 AT2G02470 361 / 3e-127 alfin-like 6 (.1.2) Potri.009G121000 [exp] 44 / 3e-05 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014843 [exp] 382 / 4e-136 AT5G05610 363 / 2e-128 alfin-like 1 (.1.2) Lus10009889 [exp] 373 / 1e-132 AT5G05610 358 / 2e-126 alfin-like 1 (.1.2) Lus10028280 [exp] 333 / 1e-116 AT5G05610 333 / 7e-117 alfin-like 1 (.1.2) Lus10005035 [exp] 331 / 9e-116 AT5G05610 325 / 2e-113 alfin-like 1 (.1.2) Lus10027805 [exp] 329 / 2e-114 AT5G05610 320 / 6e-111 alfin-like 1 (.1.2) Lus10040207 [exp] 323 / 4e-113 AT5G05610 309 / 2e-107 alfin-like 1 (.1.2) Lus10015637 [exp] 258 / 8e-87 AT5G20510 353 / 4e-124 alfin-like 5 (.1) Lus10026268 [exp] 253 / 1e-84 AT2G02470 382 / 2e-135 alfin-like 6 (.1.2) Lus10026269 [exp] 252 / 2e-84 AT2G02470 380 / 7e-135 alfin-like 6 (.1.2) Lus10042402 [exp] 230 / 5e-76 AT2G02470 357 / 4e-126 alfin-like 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF12165 [poplar] [flax] Alfin Alfin
Representative CDS sequence Show only first row Show all	>Potri.008G069200.2 pacid=42808519 polypeptide=Potri.008G069200.2.p locus=Potri.008G069200 ID=Potri.008G069200.2.v4.1 annot-version=v4.1 ATGGCTTCCATACTCACAAGCCCTCGCACTGTAGAAGAGATCTTCAAAGATTACAGCGCTCGTCGCTCTGCCCTCGTTCGTGCTCTCACTATCGAAGCCG ATGAAGTTTACATTCAATGCGATCCAGAAAAAGAAAATTTGTGCTTGTATGGACATCCAACTGAGTCATGGGAGGTGACTCTGCCAGCTGAGGAAGTCCC CCCGGAGCTCCCTGAGCCTGCTTTGGGCATTAATTTTGCCAGGGATGGGATGAGTCGTAAAGATTGGCTTTCTCTTGTGGCTGTCCATAGTGACTGTTGG TTGCTTTCCATGGCATTCTACTTTGGTGCACGACTTAATCGCAACGACAGGAAGCGATTGTTTAGCATGATAAATGATCTGCCCACCCTCTTTGAAATTG TAACTGGGAGGAAACCAGTAGAAGACAAACCTAGTGCGGAAAGTGGCAGCAAATCCAGGAATAACACAAAGAGATCAATAGATGGACAGGCGAGAAGTAA TTCCAAGTTAAGTTATGTGGAGGATGAAGACGAGCATGGAGACACCATTTGTGGGAGCTGTGCAGGGAACTACAATGCCGATGAGTTTTGGATTGGTTGT GACATCTGTGAACGATGGTACCATGGAAAATGTGTGAAGATAACACCAGCAAAAGCAGAAAGTATCAAGCAGTACAAATGCCCTTCTTGCAGCACAAAGA AGTCTAGGCACTAA
AA sequence Show only first row Show all	>Potri.008G069200.2 pacid=42808519 polypeptide=Potri.008G069200.2.p locus=Potri.008G069200 ID=Potri.008G069200.2.v4.1 annot-version=v4.1 MASILTSPRTVEEIFKDYSARRSALVRALTIEADEVYIQCDPEKENLCLYGHPTESWEVTLPAEEVPPELPEPALGINFARDGMSRKDWLSLVAVHSDCW LLSMAFYFGARLNRNDRKRLFSMINDLPTLFEIVTGRKPVEDKPSAESGSKSRNNTKRSIDGQARSNSKLSYVEDEDEHGDTICGSCAGNYNADEFWIGC DICERWYHGKCVKITPAKAESIKQYKCPSCSTKKSRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.008G069200 [exp]	0	1
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	10.48	0.8264	HMGB915
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.014G047200 [exp]	11.40	0.7757
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	12.00	0.8217
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.001G097700 [exp]	12.24	0.7698
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	12.84	0.8226
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.002G141100 [exp]	22.58	0.8165	Pt-MSJ1.3
AT5G19430			RING/U-box superfamily protein...		Potri.009G070600 [exp]	22.62	0.7468
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	22.80	0.8241
AT5G11600			unknown protein		Potri.006G238800 [exp]	25.09	0.7585
AT3G57930			unknown protein		Potri.003G211200 [exp]	27.69	0.7488

Compare expression of checked genes

Potri.008G069200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.