Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05600 528 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 506 / 1e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 504 / 3e-180 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 438 / 2e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G22880 247 / 1e-79 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT3G21420 239 / 2e-76 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 236 / 5e-75 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 234 / 2e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10490 232 / 1e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 229 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188000 [exp] 669 / 0 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 517 / 0 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 503 / 7e-180 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 496 / 3e-177 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G024100 [exp] 247 / 3e-79 AT4G16330 419 / 7e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G119100 [exp] 246 / 9e-79 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.001G355100 [exp] 242 / 2e-77 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G113100 [exp] 240 / 8e-77 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.001G382400 [exp] 240 / 9e-77 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004387 [exp] 520 / 0 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005037 [exp] 483 / 1e-171 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 477 / 8e-170 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027807 [exp] 345 / 1e-118 AT5G05600 330 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040112 [exp] 244 / 3e-78 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10030995 [exp] 244 / 6e-78 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10037292 [exp] 244 / 1e-77 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10028068 [exp] 242 / 1e-77 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10030934 [exp] 240 / 2e-76 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10030185 [exp] 239 / 2e-76 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G069300.1 pacid=42806166 polypeptide=Potri.008G069300.1.p locus=Potri.008G069300 ID=Potri.008G069300.1.v4.1 annot-version=v4.1 ATGAATAAGCTCTTAGATTGGCCCGAACCAATAGTTCGTGTACAATCCTTGTCCGACAGCGGCACACCCCTGATTCCTGAGCGATATGTCAAGCCCCCGC TAGAGAGGCCATCCATAAATTCCACTGCTTCAATGGATGTGAACATCCCTGTTATTGATCTTGTCGGACTGTACGGTGATGATCATGCCCTCCGTGCCGC TATACTTGACCAAATTTCTATAGCATGCCGGGAGTGGGGATTTTTTCAAGTGATTAACCATGGTGTTAGCCCTCAATTGATGGACCGTGCCCGAGAAGCA TGGAGGCAGTTCTTTCATTCGCCCATGGAGGTTAAGCAAGCTTATGCAAACACACCCAAGACTTATGAAGGTTATGGTAGCCGGTTAGGGGTTGAAAAGG GTGCCATACTTGATTGGAGTGATTACTACTTCCTCCACTATCTTCCTTCAACATTGAAGGACTGTAGCAAATGGCCTACCATTCCAGCTGATTGCAGGGA AGTGCTTGATGAATATGGCAAGCAATTGGTGAAGCTATGTGGGAGGTTAATGAAGATTTTATCAATAAACCTTGGATTAGGAGAGGAACGACTTCAAAAT GCATTTGGCGGCGAAAATATTGGGGCATGCCTCAGAGTTAATTTTTACCCCAAGTGTCCACAGCCTGACCTGGCCCTTGGTTTATCATCGCATTCGGATC CCGGTGGCATAACCCTTCTCTTGCCAGACAATCATGTCCCTGGTCTTCAGGTTCGTAAGGATGAGAATTGGATTACTGTAAAACCAGCTCCACATGCTTT TATTGTTAATATTGGTGATCAAATTCAGGTGCTAAGCAATGCAACTTACAAGAGTGTGGAGCATAGAGTGATAGTAAATTCATCGAAAGAGCGTGTCTCT CTTGCTTTCTTCTACAATCCAAAGAGTGATATACCCATAGAGCCATTGAAGGAGCTTCTGGCGCCTGACAGACCTCCACTCTATCCAGCGATGACATTTG ATGAATACAGACTCTTCATAAGAATGAGAGGTCCCAGTGGCAAATCCCAAGTGGAGTCTCTAAAATCTCCGAGATGA
AA sequence Show only first row Show all	>Potri.008G069300.1 pacid=42806166 polypeptide=Potri.008G069300.1.p locus=Potri.008G069300 ID=Potri.008G069300.1.v4.1 annot-version=v4.1 MNKLLDWPEPIVRVQSLSDSGTPLIPERYVKPPLERPSINSTASMDVNIPVIDLVGLYGDDHALRAAILDQISIACREWGFFQVINHGVSPQLMDRAREA WRQFFHSPMEVKQAYANTPKTYEGYGSRLGVEKGAILDWSDYYFLHYLPSTLKDCSKWPTIPADCREVLDEYGKQLVKLCGRLMKILSINLGLGEERLQN AFGGENIGACLRVNFYPKCPQPDLALGLSSHSDPGGITLLLPDNHVPGLQVRKDENWITVKPAPHAFIVNIGDQIQVLSNATYKSVEHRVIVNSSKERVS LAFFYNPKSDIPIEPLKELLAPDRPPLYPAMTFDEYRLFIRMRGPSGKSQVESLKSPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069300 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134200 [exp]	2.82	0.8942
AT3G14470			NB-ARC domain-containing disea...		Potri.001G022800 [exp]	6.32	0.8424
AT4G21920			unknown protein		Potri.004G015900 [exp]	7.54	0.8707
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441400 [exp]	8.24	0.8622
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Potri.009G084600 [exp]	9.16	0.8230
AT5G36930			Disease resistance protein (TI...		Potri.019G019710 [exp]	13.85	0.8297
AT5G36930			Disease resistance protein (TI...		Potri.019G019053 [exp]	14.89	0.8520
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	17.74	0.8620
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.007G096500 [exp]	18.11	0.8464
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.019G118200 [exp]	22.13	0.8513

Compare expression of checked genes

Potri.008G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.