Plant FIBer expression Database

Potri.008G069350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G129350
[exp]
44 / 1e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G069350.1 pacid=42806624 polypeptide=Potri.008G069350.1.p locus=Potri.008G069350 ID=Potri.008G069350.1.v4.1 annot-version=v4.1
ATGTTCTTCTTCTTTTTCTCCTCTCTCTTCTCGACTCTCTCTACACTCTCTTTGTCTATTCTTTTTTTCTTTGCGTTTTCTTTCAGTCTGTCCTCCTGCT
CGCTCTCCTCTGTCCGTTTTTTTTTTCGTTTGTGGCCTTCTCTGACTTTTTATAAAGCCAAAGGATGGCCCCTGTTCATGTGTTCGTGCCCCACGATCGT
GAGGCACGAACGCCTCTGTTTCTTTGAGAAAAAACAGGGGGCAGCTGAGGAGACGTTCATGGGAGACGTGGCCCAAAACGGTTTTGGTTTCCTGTTGAAT
CGGTCCCTGGTCTGGAGATGA
AA sequence
>Potri.008G069350.1 pacid=42806624 polypeptide=Potri.008G069350.1.p locus=Potri.008G069350 ID=Potri.008G069350.1.v4.1 annot-version=v4.1
MFFFFFSSLFSTLSTLSLSILFFFAFSFSLSSCSLSSVRFFFRLWPSLTFYKAKGWPLFMCSCPTIVRHERLCFFEKKQGAAEETFMGDVAQNGFGFLLN
RSLVWR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G069350
[exp]
0 1
AT1G18270 ketose-bisphosphate aldolase c... Potri.015G037000
[exp]
8.83 0.7737
AT2G02010 GAD4 glutamate decarboxylase 4 (.1) Potri.010G100500
[exp]
11.44 0.7807
AT1G69550 disease resistance protein (TI... Potri.005G031899
[exp]
13.74 0.7695
AT5G27550 P-loop containing nucleoside t... Potri.005G031500
[exp]
20.00 0.7616
AT3G16770 AP2_ERF RAP2.03, ATEBP,... RELATED TO AP2 3, ETHYLENE RES... Potri.010G006800
[exp]
21.35 0.7136 RAP2.3,ERF34
AT4G39830 Cupredoxin superfamily protein... Potri.010G171700
[exp]
27.65 0.7161
AT4G23030 MATE efflux family protein (.1... Potri.012G133500
[exp]
28.93 0.6991
AT2G39800 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate... Potri.008G060200
[exp]
30.39 0.7351
AT4G37180 GARP Homeodomain-like superfamily p... Potri.007G039400
[exp]
31.93 0.7380
AT1G69550 disease resistance protein (TI... Potri.005G030318
[exp]
35.62 0.7410

Potri.008G069350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.