Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAI1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07780 340 / 2e-118 TRP6, PAI1 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5) AT5G05590 340 / 4e-118 PAI2 phosphoribosylanthranilate isomerase 2 (.1.2) AT1G29410 214 / 2e-69 PAI3 phosphoribosylanthranilate isomerase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145600 [exp] 469 / 4e-169 AT1G07780 332 / 7e-115 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5) Potri.014G188400 [exp] 184 / 9e-59 AT5G05590 152 / 9e-47 phosphoribosylanthranilate isomerase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007494 [exp] 332 / 5e-115 AT1G07780 342 / 3e-119 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5) Lus10028971 [exp] 310 / 2e-106 AT1G07780 341 / 2e-118 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00697 [poplar] [flax] PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase
Representative CDS sequence Show only first row Show all	>Potri.008G069500.1 pacid=42808543 polypeptide=Potri.008G069500.1.p locus=Potri.008G069500 ID=Potri.008G069500.1.v4.1 annot-version=v4.1 ATGCTCGCAGGGTTGGCTACCGGAGGTCACTTGCAGCTAAAATTTGTCAACTTGCAAAGAAGCCATGTTCATGGTCTGGCTGGGAGTGAACTGAACTTCT CGATAATTACATCCCATTCAAGGAGTAAGGTTAATTGCATTTCCACCCCACCAAAGAAAGCCGCCTTTACTCATGAAGAACATGAAAAGAAGTGTCCTTT AGTTAAAATGTGCGGGATTACCTCAGTTCGAGATGCTTCGATGGCAGCAGAAGTTGGTGCTAATTTTATTGGGATGATTCTTTCGCCCAACTCAAAGCGT TCCATTTCACTTTCAGTTGCAAAGGAAATTTCGAAAGTTGCAAGAGAATATGAAGCAGCACCGGTAGGGGTGTTTGTGGATGATGATGCAGACACAATAT TGAGAGCCGCTGATGCAGCAGACCTTGAATTCGTGCAGCTTCACGGGAAAGGTTCACGGGCAGCTTTTCATGATTTAATGGGAAAAAATCGAATCGTGTA TGTTCTCCATGCAAATGAGAATGGAAACCTTCTAAATCAAATTTCAGATGAAGAATGTTCTTTGGTTGATTGGATTCTTGTGGATAGCGCAACAGGTGGC AGTGGCAAAGGATTTAACTGGACGGGGTTTGAATTACCACCTATCAAAAGCAAGAACGGATGGCTCTTGGCGGGAGGGATTAAGCCTGAAAACGTTAGTG AAGCTCTCTCTCTCCTCAAACCTCACGGTGTTGATGTTAGTAGTGGTATCTGCGGCTCGGATGGCATTAATAAGGATCGATCACGAATAGTGTCCTTTAT GAATGCCGTACATTCTGTACGCTATTGA
AA sequence Show only first row Show all	>Potri.008G069500.1 pacid=42808543 polypeptide=Potri.008G069500.1.p locus=Potri.008G069500 ID=Potri.008G069500.1.v4.1 annot-version=v4.1 MLAGLATGGHLQLKFVNLQRSHVHGLAGSELNFSIITSHSRSKVNCISTPPKKAAFTHEEHEKKCPLVKMCGITSVRDASMAAEVGANFIGMILSPNSKR SISLSVAKEISKVAREYEAAPVGVFVDDDADTILRAADAADLEFVQLHGKGSRAAFHDLMGKNRIVYVLHANENGNLLNQISDEECSLVDWILVDSATGG SGKGFNWTGFELPPIKSKNGWLLAGGIKPENVSEALSLLKPHGVDVSSGICGSDGINKDRSRIVSFMNAVHSVRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Potri.008G069500 [exp]	0	1	PAI1.1
AT1G14990			unknown protein		Potri.008G129900 [exp]	8.36	0.8515
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	13.34	0.8516
AT1G16790			ribosomal protein-related (.1)		Potri.010G254100 [exp]	14.28	0.8501
					Potri.004G178101 [exp]	19.13	0.8510
AT1G56345			Pseudouridine synthase family ...		Potri.013G009300 [exp]	25.09	0.8291
AT5G23230		NIC2	nicotinamidase 2 (.1)		Potri.003G003300 [exp]	27.11	0.8438
AT1G71730			unknown protein		Potri.005G198100 [exp]	32.29	0.8371
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	34.64	0.8426
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.007G122800 [exp]	40.98	0.8018
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Potri.003G123200 [exp]	42.44	0.7765

Compare expression of checked genes

Potri.008G069500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.