Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05570 624 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT4G35560 82 / 6e-16 DAW1 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187700 [exp] 1158 / 0 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.016G117800 [exp] 601 / 0 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G101600 [exp] 83 / 4e-16 AT4G35560 1037 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G101600 [exp] 74 / 7e-16 AT5G05570 72 / 8e-16 transducin family protein / WD-40 repeat family protein (.1.2) Potri.016G117700 [exp] 74 / 9e-16 AT5G05570 90 / 3e-22 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037841 [exp] 749 / 0 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10030399 [exp] 737 / 0 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10009082 [exp] 248 / 6e-70 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001254 [exp] 66 / 3e-12 AT5G05570 85 / 9e-20 transducin family protein / WD-40 repeat family protein (.1.2) Lus10027810 [exp] 66 / 3e-12 AT5G05570 84 / 2e-19 transducin family protein / WD-40 repeat family protein (.1.2) Lus10035989 [exp] 67 / 4e-11 AT4G35560 971 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10002478 [exp] 57 / 9e-10 AT5G05570 73 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [poplar] [flax] SNARE-fusion PF00957 [poplar] [flax] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Potri.008G069700.11 pacid=42807113 polypeptide=Potri.008G069700.11.p locus=Potri.008G069700 ID=Potri.008G069700.11.v4.1 annot-version=v4.1 ATGGTTGTTTTACCTAGTGGTGGCTTGATGGGAACTTCAGGCACTTTGGTATTAACTAATCCAGGACAGCTGCACTTTTATAATGACGCTGGCTTGTCTT CCTCAACATCCCTACAAGAGACAAGGAATTATGTTTCTTCAATGCAGTACCCCATGGTTATACCTACTATCGAACCACAATTGACTGCAGCAAAATTTGG TCTGGTCTTTAGAGATGGCAAGTTCTCAAAGGCTCTTTCTGAGGCAATTTCTGCTAGAAAACCTCAAGCAACACATTCTTCTGGAAATACAAATTGGCCT TTGACTGGTGGAGTTCCTAGCCAACTTCATGATGCTGAAAAATATCAGGTCGAGAGATTATATATAGCTGGTTACCAAGATGGAACTGTAAGAATATGGG ATGCCACCTTTCCAACATTTGCACTCATTTATGTTTTAGGACCGGAGGTCAAAGGTATCAATGTTGCTAATGTTAATGCATCAGTATCTGCTTTGGATTT TTGCTCCACTACCTTATGTTTAGCTATTGGCAATGAGTGTGGTACGGTTCGTCTATATAAGCTTGTATGTAGTGCTGATGAGATGAGTTTGAAGTTTGTG ACAGAAACTGAAAAGGAAGTCTACACTCTGGACCAAGAGGATGGACCTCAATGTACAGCTGTATTTTCTTTCCTAAGTTCTCCTATATATGCATTGCAAT TTGCAAATTCTGGAACCAGACTTGCTGTGGGATTTCATTGTGCCCAGGTAGCAATGCTTGACACTAGTACATCATCTGTTTTATTTCTCACGGACAGTCT ATCTGGCTCCAGTTTGCCTGTCAAGTCTCTGGCTGTGTTTTCAAATTGTATTGACTTAATAAATAATTCAGAAGACACTGGATCCACAATTGTGGAAGAT CATGTAAGTTTGAAAGTGTTTGCAATGACCAAAGATGCCTGTATTGTTGTCATGGATGGAAACAATGGTGGTATTCTCTTCTCCCAATCAATAAAATCTG CAACGGAACTTATCTCACCTTCAATATATATTATAGAGGGTGGCAGCTACATCTCTGAAATGTCTAGTGGAAAACATTTATCTGTTTCATCTCAGAAAAG TGACACTAAAAGTGAATCTGCCCCAGCTGCTTCTTGCAGTGAAAGTTCTCCACTTAAAGTTGACCACGAGGCCTCTGCTAAAGCAGCCCGCTTTAAGCAG AGAGAAGAAAATTTTCTTCTTTTGTTTTGTTGTGAGGATGCATTGCATTTGCATTCTTTGAATGAGGTGGACAGTGATCCTATTCGAAAGGTAAATCTCA TGAAACCATGCTGTTGGAGTGCACCATTCAAGAAGGACGATAAAGAGTGTGGGATCATTTTACTCTATCAGACCGGAGAGATTGAAATTAGATCTTTGCC AGATCTTGAAGTGGTTGTAGAAAGCTCTTTAATGTCAATCCTAAGGTGGAACTTCAAGACTAATATGGAGAAGACAATATGTCCATCTGAAAATGCTCAG ATTATTCTGGTGAATGGATGTGAATTTGCTGCTATATCGCTTTTGGCCTCTGAAAACCACTTCAGGATTCCAGAGTCATTGCCTTGCCTTCATGATAAAC TACTTACAGCTGCTGCTGATGCCACAATCAGTTTATCTCCCAATCAGAAGATAACACAGGGTGCTTCCTCTGGTATTTTAGGTGGTTTGATTAAGGGTTT CCCAGGGAGCAAGGCAGAGCACCATGTAGATCTTCTTGAAGTTTGTAAGAATGATTTTGCTCATTTAGAGAGCATATTTTCCAGCCCTCCTTTCTTAAAG CCTTCTATCGACCATGCGGATGGCCAAAAAGTTGTGGAGCTTAGCATAGATGACATTGATATTGACGAACCTCTATTTGTCTCACCTTCATCTGAAACGA AGAAGAATGATACTAAAGATAAGGGAACAGAAAGGGAAAGATTATTTGAAGGTGCAAGTACTGATTCACAGCCAAAGCTCAGAACAGCCGATGAAATTAA GGCTAAATATAGGAAGGGGGATGCCTCTGCTGCAGCTGCACTTGCAAAGGACAAGCTCATACAACGCCAGGAAAAACTTGAGAGGCTCAGTGAGCGTACA GCGGAGCTGCAAAGTGGGGCCGAAAACTTTGCATCAATGGCAAATGAACTTGCCAAGCAAATGGAGAAACGCAAATGGTGGAACATATGA
AA sequence Show only first row Show all	>Potri.008G069700.11 pacid=42807113 polypeptide=Potri.008G069700.11.p locus=Potri.008G069700 ID=Potri.008G069700.11.v4.1 annot-version=v4.1 MVVLPSGGLMGTSGTLVLTNPGQLHFYNDAGLSSSTSLQETRNYVSSMQYPMVIPTIEPQLTAAKFGLVFRDGKFSKALSEAISARKPQATHSSGNTNWP LTGGVPSQLHDAEKYQVERLYIAGYQDGTVRIWDATFPTFALIYVLGPEVKGINVANVNASVSALDFCSTTLCLAIGNECGTVRLYKLVCSADEMSLKFV TETEKEVYTLDQEDGPQCTAVFSFLSSPIYALQFANSGTRLAVGFHCAQVAMLDTSTSSVLFLTDSLSGSSLPVKSLAVFSNCIDLINNSEDTGSTIVED HVSLKVFAMTKDACIVVMDGNNGGILFSQSIKSATELISPSIYIIEGGSYISEMSSGKHLSVSSQKSDTKSESAPAASCSESSPLKVDHEASAKAARFKQ REENFLLLFCCEDALHLHSLNEVDSDPIRKVNLMKPCCWSAPFKKDDKECGIILLYQTGEIEIRSLPDLEVVVESSLMSILRWNFKTNMEKTICPSENAQ IILVNGCEFAAISLLASENHFRIPESLPCLHDKLLTAAADATISLSPNQKITQGASSGILGGLIKGFPGSKAEHHVDLLEVCKNDFAHLESIFSSPPFLK PSIDHADGQKVVELSIDDIDIDEPLFVSPSSETKKNDTKDKGTERERLFEGASTDSQPKLRTADEIKAKYRKGDASAAAALAKDKLIQRQEKLERLSERT AELQSGAENFASMANELAKQMEKRKWWNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	0	1
AT5G55950			Nucleotide/sugar transporter f...		Potri.001G370800 [exp]	1.73	0.9156
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123900 [exp]	3.16	0.9002
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.003G214200 [exp]	5.19	0.8783	CALS1.4
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	5.29	0.9115
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.018G065900 [exp]	7.07	0.8797
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.012G114600 [exp]	7.41	0.9109
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Potri.011G123900 [exp]	8.00	0.9048
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	9.48	0.8860
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	10.39	0.9115
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.009G119500 [exp]	10.95	0.8858

Compare expression of checked genes

Potri.008G069700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.