Plant FIBer expression Database

Potri.008G069750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05570 375 / 3e-121 transducin family protein / WD-40 repeat family protein (.1.2)
AT4G35560 202 / 6e-58 DAW1 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G187700
[exp]
577 / 0 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Potri.016G117800
[exp]
364 / 4e-117 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Potri.005G101600
[exp]
206 / 2e-59 AT4G35560 1037 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037841
[exp]
438 / 4e-145 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Lus10030399
[exp]
412 / 4e-135 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Lus10035989
[exp]
171 / 5e-47 AT4G35560 971 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10009082
[exp]
75 / 2e-14 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.008G069750.1 pacid=42807300 polypeptide=Potri.008G069750.1.p locus=Potri.008G069750 ID=Potri.008G069750.1.v4.1 annot-version=v4.1
ATGTTTTCCAAACTCTTTCAAAAACACACCGCACAACAACAGCCACCTTCACCACAGCAACAACCACCACCGCAACCGCAATCACCACCTGCAAAGGATA
ATGTGTCAAAGGGAGGGTTGACACTGAAAGATATAAATCCACGGATTGCTCTACACTATGGGATCCCTTCTACTGCGTCTGTTTTAGCTTTTGATCACAT
TCAAAGCCTTTTAGCAATTGGAACACTGGATGGAAGAATAAAAGTGATCGGTGGTGATAGCATCGAAGGACTTCTTGTTTCTCCAAAGACATTACCATTC
AAATACTTAGAGTTTCTACAAAATCAAGGTATCCTAGTCAGCGTGTCAAGTGACAATGAGATTCAGGTTTGGGATTTAGAGCAAAGACAAATTGCTTCCA
CTTTACAATGGGACTCCAATATAACTGCATTCTCTGTTATTTTTGCCTCAAGTTACATGTATATTGGAGATGAGTATGGGATGGTGTATGTATTGAAGTA
TGATGCCGAAGAAGTTAAACTTGTACAGATGCCATACCATGTTCCTGCAGATGTAGCAGAGGATGCATCTGGTATGTCATCACCTAAGAATCATTCTGTT
GTAGGAGTTCTGCCCCAACCTTCTTCTCAAGGAAACAAAGTGTTGATTGCATATGAGGATGGGTTGATGATTCTTTGGGATGTCTCTGAAGATAAAGTTG
TTCTAGTTAAAGGGAACAAAGATATTGAATTGAAATGTGAAATAACAGCTGATTCTCACAAAGAAATAGGACACAAGCTTTCTGATGATAGATCAGACTA
TGAGCCATTGGAGAAAGAGATAGCTGCCCTCTGTTGGGCATCTACTGATGGGTCAGTTCTTGCTGTTGGTTATGTTGATGGAGATATATTGTTGTGGAAC
CTATCAAGTACTGCTTCTGCTACAGATAAGCATGCTGCAAAATCATCAAACGATGTTGTTAAGCTACAGTTATCCACAGGTGACAGAAGACTCCCTGTCA
TTGTTTTGCATTGGTCTTCACACAGACCGCATAATGAGTGTTGA
AA sequence
>Potri.008G069750.1 pacid=42807300 polypeptide=Potri.008G069750.1.p locus=Potri.008G069750 ID=Potri.008G069750.1.v4.1 annot-version=v4.1
MFSKLFQKHTAQQQPPSPQQQPPPQPQSPPAKDNVSKGGLTLKDINPRIALHYGIPSTASVLAFDHIQSLLAIGTLDGRIKVIGGDSIEGLLVSPKTLPF
KYLEFLQNQGILVSVSSDNEIQVWDLEQRQIASTLQWDSNITAFSVIFASSYMYIGDEYGMVYVLKYDAEEVKLVQMPYHVPADVAEDASGMSSPKNHSV
VGVLPQPSSQGNKVLIAYEDGLMILWDVSEDKVVLVKGNKDIELKCEITADSHKEIGHKLSDDRSDYEPLEKEIAALCWASTDGSVLAVGYVDGDILLWN
LSSTASATDKHAAKSSNDVVKLQLSTGDRRLPVIVLHWSSHRPHNEC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05570 transducin family protein / WD... Potri.008G069750
[exp]
0 1
AT1G27700 Syntaxin/t-SNARE family protei... Potri.004G090200
[exp]
30.19 0.7777
Potri.017G065550
[exp]
33.76 0.6948
AT1G77010 Pentatricopeptide repeat (PPR)... Potri.002G075200
[exp]
35.32 0.7530
AT5G01110 Tetratricopeptide repeat (TPR)... Potri.001G276500
[exp]
35.88 0.7603
AT2G01130 DEA(D/H)-box RNA helicase fami... Potri.010G117800
[exp]
39.91 0.7580
AT5G55840 Pentatricopeptide repeat (PPR)... Potri.001G368700
[exp]
41.23 0.7561
AT4G00450 CCT, CRP CRYPTIC PRECOCIOUS, CENTER CIT... Potri.002G159900
[exp]
45.36 0.7620 Pt-CRP.3
AT3G25910 Protein of unknown function (D... Potri.003G060800
[exp]
50.95 0.7534
AT5G43740 Disease resistance protein (CC... Potri.001G432200
[exp]
60.66 0.7449
AT5G05800 unknown protein Potri.007G062850
[exp]
62.24 0.7328

Potri.008G069750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.