Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11150 263 / 4e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G30040 76 / 4e-15 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT1G78440 74 / 1e-14 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT3G13610 70 / 5e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G34555 64 / 5e-11 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G80340 62 / 2e-10 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G80330 60 / 9e-10 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G15550 59 / 1e-09 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT5G63595 57 / 4e-09 ATFLS4, FLS4 flavonol synthase 4 (.1) AT4G10500 54 / 8e-08 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G095600 [exp] 83 / 2e-17 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.001G378400 [exp] 82 / 4e-17 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 79 / 3e-16 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.001G189400 [exp] 66 / 1e-11 AT1G79760 170 / 4e-50 downstream target of AGL15-4 (.1) Potri.008G145300 [exp] 63 / 8e-11 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.006G247700 [exp] 59 / 2e-09 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.019G014454 [exp] 58 / 3e-09 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.010G096800 [exp] 58 / 3e-09 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G139700 [exp] 57 / 4e-09 AT5G08640 446 / 3e-158 flavonol synthase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007495 [exp] 251 / 5e-80 AT3G11150 221 / 2e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028972 [exp] 191 / 7e-59 AT3G11150 176 / 3e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023311 [exp] 93 / 4e-21 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10008100 [exp] 63 / 7e-11 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10024882 [exp] 63 / 1e-10 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000711 [exp] 62 / 2e-10 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011981 [exp] 60 / 1e-09 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10023602 [exp] 59 / 2e-09 AT3G11180 158 / 5e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015252 [exp] 58 / 3e-09 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011980 [exp] 57 / 8e-09 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G069800.1 pacid=42808545 polypeptide=Potri.008G069800.1.p locus=Potri.008G069800 ID=Potri.008G069800.1.v4.1 annot-version=v4.1 ATGACCTCCTCAGCTCTAGAGCAAACAAAACATCTGTCAAAAATGGACAGCACGACAGCAGCCCCGCCACCAACGCCATCAGCACAGCCGAACAGCCAAC TTGCCTCTTCAGCAGCATCTGCCGATATCCTCTCTCGTCTCCTACATCGCCTGCCCCCTACTCTCTCCCTCCCCACTCGCCGTTCCAGTCCTGCCACGTC TTTCCCTCTCATCTCTCTCTCTGACCCAAACCTTCAAGACCTTATATTCTCTGCATCCTCTCAACGCGGTTACTTTCAACTCACAAACCACAACATACCT TCCAAACTCGCGACCTCAGCGGAGTTGGAATCTGTTTCTCTCTTTGATCTCGCTAAAGATAAAAAAGAATCGTACTTTCCTAAAAACTGGCCTCTGGGTT TCGAAGGAGATGAAGATGGAAACGGCGAGTCGTTTTGGTTGGACGCTGAGTGTTCCACTGTTTCAACTGAGTTGGTTTTAGCTTCCCTGCGCGAGCTAAC TCGGGCTCTAGAGAAACTGGGGTTAGAGGTAATTCAAATGCTTTCAAATGGAGCGGGGTTCGAGAATCCGCTAAAGGAGCATCCGACCAGGAATTATTCA TTGTTATGTTTACATGGTGGTTTGGATGGGAATGATGACAAGCCTGGTCTGTCGGGTGGGTCTTATCCTTACATAGTCGGGTTGCAGTATCAAATTCGGT GCCAGAAGTATTCCCTGCTGACGGATTCGGGTTGGGTTACTGTGCTGCCACAGGTGGACTCAATTATGGTTACAGTCGGCGACATTGCTCAGGTGTGGAG CAATGGCAAATTGAAGAAAGTAAGAGGAAGACCAAAGGCATGCTTGGGAGATTGTGAAAACTCGAGATGCATATCGATGTCACTACTAGTTACTCTTCCC TCGGAAAGTACAGTCTCTCCCCTCCTTCCTAAAGTGATTACTGATGGAATTAATGCAAACGAGGATGAAATCAGAGAAGATGAAGAACAAGATAATATTC ACAGTGTATGTAAGACGGGAAGGAGATTTGGCTCGTTTCCTTTCGATGACTATGCTTGGAGAGTGTATCATGGACCTCTCCTCTTCAAAGACCCTCTTGA CAAATATCGCATCTAG
AA sequence Show only first row Show all	>Potri.008G069800.1 pacid=42808545 polypeptide=Potri.008G069800.1.p locus=Potri.008G069800 ID=Potri.008G069800.1.v4.1 annot-version=v4.1 MTSSALEQTKHLSKMDSTTAAPPPTPSAQPNSQLASSAASADILSRLLHRLPPTLSLPTRRSSPATSFPLISLSDPNLQDLIFSASSQRGYFQLTNHNIP SKLATSAELESVSLFDLAKDKKESYFPKNWPLGFEGDEDGNGESFWLDAECSTVSTELVLASLRELTRALEKLGLEVIQMLSNGAGFENPLKEHPTRNYS LLCLHGGLDGNDDKPGLSGGSYPYIVGLQYQIRCQKYSLLTDSGWVTVLPQVDSIMVTVGDIAQVWSNGKLKKVRGRPKACLGDCENSRCISMSLLVTLP SESTVSPLLPKVITDGINANEDEIREDEEQDNIHSVCKTGRRFGSFPFDDYAWRVYHGPLLFKDPLDKYRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069800 [exp]	0	1
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G091400 [exp]	1.00	0.8661
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179400 [exp]	2.23	0.8155
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Potri.014G029300 [exp]	2.44	0.8374
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Potri.011G022400 [exp]	3.74	0.7852
AT5G64880			unknown protein		Potri.007G081700 [exp]	6.92	0.7251
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G058501 [exp]	6.92	0.7834
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Potri.018G082900 [exp]	12.00	0.7316
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.014G193300 [exp]	13.41	0.7711
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Potri.005G226600 [exp]	14.66	0.6751	Pt-POP.1
AT2G45720			ARM repeat superfamily protein...		Potri.002G153700 [exp]	14.69	0.7176

Compare expression of checked genes

Potri.008G069800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.