Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55990 687 / 0 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 558 / 0 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 437 / 4e-151 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11030 343 / 7e-114 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT5G01360 342 / 1e-113 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40320 334 / 2e-110 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT1G73140 324 / 1e-106 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01620 299 / 9e-97 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 290 / 2e-93 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G58600 239 / 3e-74 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187600 [exp] 820 / 0 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 551 / 0 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187300 [exp] 507 / 9e-178 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 498 / 2e-174 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070200 [exp] 391 / 9e-133 AT3G55990 430 / 3e-148 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 374 / 4e-126 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G073300 [exp] 356 / 3e-119 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 340 / 6e-113 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.001G376700 [exp] 337 / 5e-112 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007497 [exp] 659 / 0 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 658 / 0 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 639 / 0 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 358 / 5e-120 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 352 / 2e-117 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10009839 [exp] 338 / 1e-111 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 336 / 5e-111 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10042845 [exp] 316 / 3e-103 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10028141 [exp] 314 / 1e-102 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 313 / 1e-102 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.008G069900.1 pacid=42808860 polypeptide=Potri.008G069900.1.p locus=Potri.008G069900 ID=Potri.008G069900.1.v4.1 annot-version=v4.1 ATGCAGACATCAAGGAGGAAGTCGCCTCTCCTCTCTTCAGTAACCATAGCCATGAAACACAGGAAGAACAACAATCTCTCTGTATTTGTTGTGGTATCCT CTATCTTTATCTTCGGAGTCTTCATGTACAATGAGGACGTGAAGTCAATTGCCGAGTTCCCATTTTCATGGCCTAAATCTCAAGAAATCCAAGAAGAGCT ATCAAAAGGAACCACCCCAGTTCAAGAAACCCTCAAGAAGGACCGAGAACTCCCAGCTTCGGTTGGTTCAAGAACTTCACTGGAAGAACCTCAAGTTGAT CAGGAGTTTGAAGAGAATCAAGAATCTGATAAATTGAAGTCTAGTGGATCAAAAGAAGATGAGGAAAAGATTGAATTGCCAATCATCGAAGAAGATGATG TTGATGTTGAATTGCCACCAGAAGAGTGTGATCTTTTCACAGGAGAATGGGTTTTTGACAACGAGACACGCCCTTTGTATAAAGAGGATGAATGTGAGTT CCTTACAGCACAAGTGACTTGCATGAGGAATGGAAGAAAGGATTCTTTGTACCAGAATTGGAAATGGCAACCTAGAGATTGTTCTTTGCCAAAGTTCAAG CCAAGGCTACTGCTAAACAAGTTAAGGAATAAGAGGCTTATGTTTGTTGGGGATTCGTTGAATAGGAATCAGTGGGAATCAATGATTTGTTTTGTTCAAT CCGTAATCCCTCCTGGAAGAAAGAGTTTGAACAAGACTGGATCTTTAGCTGTGTTCAGAATCGAGGACTATAATGCAACAGTGGAGTTCTATTGGGCCCC GTTTTTGGTCGAGTCAAACTCCGACGATCCAAATATGCACAGCATCTTGAACAGAATAATCATGCCTGAATCAATTGATAAGCATGGTGTCGACTGGAAG AATGTCGACTACCTGATTTTTAACACATACATCTGGTGGATGAACACTTTCAGCATGAAAGTTCTACGTGGATCGTTTGATGAAGGGTCCACCGAGTATG ACGAGATCGAACGGCCAGTAGCGTACAGGAGAGTTTTAAATACGTGGTCGAAGTGGGTGGAGAAAAATGTGGATCCCAATCGTACCACCGTCTTCTTCAG TAGCATGTCTCCTCTTCATATCAAGAGCTTGGACTGGGAGAACCCGGATGGCATAAAATGTGCCAAGGAGACAGCCCCAATTCTGAATGTAAGCATGCCA TTGAATGTGGGCACGGACCGTAGGCTCTTTGTGGTTGCAGCTAATATTACTGGATCGATGAAAGTGCCTGTCCATTTTCTCAACATTACTAAACTTTCCG AGTACAGAAAAGATGCACATACTTCAGTCCACACCATCCGTCAGGGCAAAATGCTAACCCCGGAGCAGCAGGCTGACCCGGAAACATATGCCGACTGTAT CCACTGGTGTCTGCCCGGGTTGCCTGACACGTGGAATGAATTCATTTACACACGTATAATTTCTCGCACGTGA
AA sequence Show only first row Show all	>Potri.008G069900.1 pacid=42808860 polypeptide=Potri.008G069900.1.p locus=Potri.008G069900 ID=Potri.008G069900.1.v4.1 annot-version=v4.1 MQTSRRKSPLLSSVTIAMKHRKNNNLSVFVVVSSIFIFGVFMYNEDVKSIAEFPFSWPKSQEIQEELSKGTTPVQETLKKDRELPASVGSRTSLEEPQVD QEFEENQESDKLKSSGSKEDEEKIELPIIEEDDVDVELPPEECDLFTGEWVFDNETRPLYKEDECEFLTAQVTCMRNGRKDSLYQNWKWQPRDCSLPKFK PRLLLNKLRNKRLMFVGDSLNRNQWESMICFVQSVIPPGRKSLNKTGSLAVFRIEDYNATVEFYWAPFLVESNSDDPNMHSILNRIIMPESIDKHGVDWK NVDYLIFNTYIWWMNTFSMKVLRGSFDEGSTEYDEIERPVAYRRVLNTWSKWVEKNVDPNRTTVFFSSMSPLHIKSLDWENPDGIKCAKETAPILNVSMP LNVGTDRRLFVVAANITGSMKVPVHFLNITKLSEYRKDAHTSVHTIRQGKMLTPEQQADPETYADCIHWCLPGLPDTWNEFIYTRIISRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	0	1
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	1.41	0.9741
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	1.41	0.9719
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Potri.001G237200 [exp]	3.16	0.9624
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.013G117900 [exp]	3.46	0.9432
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	3.46	0.9665
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Potri.001G354900 [exp]	3.74	0.9371
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	3.87	0.9668
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G237700 [exp]	4.24	0.9472
AT5G43100			Eukaryotic aspartyl protease f...		Potri.005G144600 [exp]	4.89	0.9575
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.005G141500 [exp]	5.47	0.9459

Compare expression of checked genes

Potri.008G069900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.