Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55990 66 / 6e-14 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 59 / 1e-11 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 51 / 6e-09 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G73140 50 / 1e-08 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G38320 45 / 9e-07 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187500 [exp] 110 / 2e-30 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187600 [exp] 66 / 6e-14 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 62 / 9e-13 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 60 / 5e-12 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187300 [exp] 55 / 2e-10 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070200 [exp] 49 / 3e-08 AT3G55990 430 / 3e-148 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.001G376700 [exp] 49 / 4e-08 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.016G125500 [exp] 42 / 2e-05 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.008G073300 [exp] 41 / 3e-05 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007497 [exp] 62 / 2e-12 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 61 / 2e-12 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 53 / 2e-09 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10042845 [exp] 50 / 3e-08 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10028141 [exp] 48 / 1e-07 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10017428 [exp] 41 / 4e-05 AT2G40320 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10014238 [exp] 40 / 6e-05 AT2G38320 495 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10022676 [exp] 40 / 7e-05 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10007528 [exp] 40 / 9e-05 AT2G40320 357 / 7e-123 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10009839 [exp] 37 / 0.0007 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.008G069950.1 pacid=42806095 polypeptide=Potri.008G069950.1.p locus=Potri.008G069950 ID=Potri.008G069950.1.v4.1 annot-version=v4.1 ATGTGCAGTGAGAACATCAAGCCAGTATTAGCAGGGTCATTTTTGTTATCAAGAAGTGAACTTAAAGGAATCAGAGAGAAAGATGAGGAGGTTATATTGC CACCGAAGGACTGTGATCTTTTCACAGGGCAATGGGTTTTCGATAATGTGACTCATCCTTTGTACATAGAGGAAAAATGTGAGAAACTTGTCAGATCGAG GAATATAACACGACAGTGGAGTTTTATTGGGCACCGTTCGAATAGAATTCAGATGATCCATTGA
AA sequence Show only first row Show all	>Potri.008G069950.1 pacid=42806095 polypeptide=Potri.008G069950.1.p locus=Potri.008G069950 ID=Potri.008G069950.1.v4.1 annot-version=v4.1 MCSENIKPVLAGSFLLSRSELKGIREKDEEVILPPKDCDLFTGQWVFDNVTHPLYIEEKCEKLVRSRNITRQWSFIGHRSNRIQMIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069950 [exp]	0	1
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Potri.017G095200 [exp]	9.32	0.8840
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.013G024400 [exp]	10.48	0.8656
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	11.22	0.8597
AT3G24060			Plant self-incompatibility pro...		Potri.003G175200 [exp]	12.00	0.8709
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.001G156200 [exp]	16.49	0.8593
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	18.97	0.8573
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.007G002600 [exp]	20.07	0.8498
AT4G13950		RALFL31	ralf-like 31 (.1)		Potri.017G059500 [exp]	26.07	0.8309
AT1G62981			Protein of unknown function (D...		Potri.001G112800 [exp]	29.25	0.8664
AT1G79670		WAKL22, RFO1	RESISTANCE TO FUSARIUM OXYSPOR...		Potri.001G040884 [exp]	29.29	0.8417

Compare expression of checked genes

Potri.008G069950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.