Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55990 530 / 0 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 493 / 9e-174 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 476 / 6e-167 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G01360 355 / 3e-119 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G73140 335 / 6e-112 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40320 334 / 4e-111 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 329 / 5e-109 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT5G01620 313 / 2e-102 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 310 / 4e-102 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G58600 263 / 5e-84 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069900 [exp] 542 / 0 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 535 / 0 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187600 [exp] 535 / 0 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187300 [exp] 518 / 0 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070200 [exp] 414 / 2e-142 AT3G55990 430 / 3e-148 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 390 / 4e-133 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.001G376700 [exp] 353 / 5e-119 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G073300 [exp] 348 / 1e-116 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 339 / 5e-113 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007497 [exp] 531 / 0 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 525 / 0 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 516 / 0 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 379 / 1e-128 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 372 / 8e-126 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10042845 [exp] 343 / 1e-114 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10040953 [exp] 342 / 8e-114 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10009839 [exp] 337 / 5e-112 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10028141 [exp] 335 / 1e-111 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 321 / 6e-106 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.008G070000.1 pacid=42808813 polypeptide=Potri.008G070000.1.p locus=Potri.008G070000 ID=Potri.008G070000.1.v4.1 annot-version=v4.1 ATGAAGGATGGAGGTGGCCTTAGAAGCCAGAGCTGTAATTACCCCTCAATCTTGGTATTTTTTACTTTCTCTATCGTTGCGTGTGTTCTTTTCAATGAAA ATTTTGTGGCACTCCCATATCCAAGATTCAAAGGGATCTTGGAGGAGTACCCAGCAGTTCAAGAAAATAGCAATATTGATGATGTTAGGCCCTCAGCAAA GGGTACTAAAGAAAATGTAAATATGGAGCTGGTTTCTGTTGAAGGAGATCATGAAGATGAAGAAGTGGTGTTGCCACGGAAAGAGTGTGATATCTTCCTA GGAGAGTGGGTTCTTGATAAGTTGACTCATCCTCTATATAAAGAAGAAGACTGTGAGTTCCTGACTGATTCAGTGACTTGCATAAAAAATGGAAGGAAGG ATTCAATGTATCAAAATTGGAGATGGCAGCCCAGAGATTGCTCTTTGCCCAAGTTCAAAGCAACGTTGTTGCTGGAGAAACTTAGAGGGAAGAGGCTTAT GTTTGTAGGAGATTCATTGAATCGTCAGCAATGGGAATCCATGATTTGTCTGGTCCAATCTGTGATTCCTCTAGACAAGAAGAGTTTGTCAAGCAGCTCA AGTTTTCTCAGTGTCTTCAAAATTGAGGACTACAACGCTACCATAGAGTTTTACTGGGCTCCTTTTTTGGTCGAGTCCAATTCGGATGCTGTATCAAATA GGAATGGCCAATCGGACCGCGTTATCATGCCCGAATCAATCTCAAAACATGGAGATGACTGGAAGAATGTCGATTACCTTATATTCAACACTTATATTTG GTGGATGACGTCTATTTATTCAAAAGTATTGCGAGGAGGATCATTTGTTGAAGGCCCCATAGAGTATGATGAAGTTGAGTTGCCAATAGCATATGAGAGA GTTTTGAGGACGTGGGCCAAATGGGTGGAGGAAAATGTTGATCCCAAGCATTCCTCTGTTTTCTTCAGCAGCATGTCTCCTACCCATGCCAGGAACCTGG ACTGGGACAATCCTGATGGGATTAAGTGTTCTAATGAAACTAAACCGATCCTAAACAAGTCCAAGCCATTCGATGTGGGAACGAACCGACAACTTTTTGC GATCGCAGTGAATGTGACTCGTTCAATGAAAGTACCAGTCAACTTCCTCAATGTAACCACACTGTCTGAATATCGGAAAGATGCACACACGTCCATTTAC ACAGCTATTGAAGGCAAGTTACTCTCGCCGGAGGAAAAGTCTGACCCACTCAAGTATGCCGATTGTTTGCACTGGTGTCTGCCTGGACTTCCTGATACAT GGAATGAGCTGCTCTACACATATATCATCTCTCGTACTTGA
AA sequence Show only first row Show all	>Potri.008G070000.1 pacid=42808813 polypeptide=Potri.008G070000.1.p locus=Potri.008G070000 ID=Potri.008G070000.1.v4.1 annot-version=v4.1 MKDGGGLRSQSCNYPSILVFFTFSIVACVLFNENFVALPYPRFKGILEEYPAVQENSNIDDVRPSAKGTKENVNMELVSVEGDHEDEEVVLPRKECDIFL GEWVLDKLTHPLYKEEDCEFLTDSVTCIKNGRKDSMYQNWRWQPRDCSLPKFKATLLLEKLRGKRLMFVGDSLNRQQWESMICLVQSVIPLDKKSLSSSS SFLSVFKIEDYNATIEFYWAPFLVESNSDAVSNRNGQSDRVIMPESISKHGDDWKNVDYLIFNTYIWWMTSIYSKVLRGGSFVEGPIEYDEVELPIAYER VLRTWAKWVEENVDPKHSSVFFSSMSPTHARNLDWDNPDGIKCSNETKPILNKSKPFDVGTNRQLFAIAVNVTRSMKVPVNFLNVTTLSEYRKDAHTSIY TAIEGKLLSPEEKSDPLKYADCLHWCLPGLPDTWNELLYTYIISRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070000 [exp]	0	1
AT4G31020			alpha/beta-Hydrolases superfam...		Potri.006G188100 [exp]	9.00	0.6556
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	11.48	0.7099
AT5G39530			Protein of unknown function (D...		Potri.017G087500 [exp]	12.72	0.7022
AT5G17850			Sodium/calcium exchanger famil...		Potri.019G040301 [exp]	14.49	0.6526
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160100 [exp]	14.76	0.7240	Pt-PAP.2
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	14.79	0.7211
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	16.00	0.7364
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	20.32	0.7041
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Potri.018G149900 [exp]	21.67	0.6090
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	22.69	0.7122

Compare expression of checked genes

Potri.008G070000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.