Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55990 430 / 4e-148 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40160 417 / 5e-144 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40150 404 / 8e-139 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT3G11030 318 / 5e-105 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT5G01360 314 / 1e-103 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G73140 308 / 2e-101 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40320 304 / 7e-100 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT2G38320 288 / 8e-94 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G01620 286 / 2e-92 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT3G54260 253 / 2e-80 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187300 [exp] 449 / 8e-156 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 424 / 1e-145 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187600 [exp] 419 / 6e-144 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 415 / 3e-143 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 414 / 2e-142 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 332 / 2e-110 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G073300 [exp] 326 / 2e-108 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 314 / 1e-103 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.001G376700 [exp] 307 / 5e-101 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007497 [exp] 421 / 3e-145 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 421 / 4e-145 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 410 / 8e-141 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 334 / 2e-111 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 331 / 3e-110 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10009839 [exp] 305 / 1e-99 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 302 / 1e-98 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10042845 [exp] 294 / 1e-95 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10028141 [exp] 292 / 5e-95 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 290 / 2e-94 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.008G070200.1 pacid=42807019 polypeptide=Potri.008G070200.1.p locus=Potri.008G070200 ID=Potri.008G070200.1.v4.1 annot-version=v4.1 ATGAAGCAGGGAAAATTTGGCAATCTGAAACTCCAACACTCTAAACTCGTATCAAGTACTGTAGCAATATTCTTGATCTCTCTCCTTCCTTGCTTTGTTT TCAGTGAGCACACAGATTCGGGATCAATCCCGTCCCACTTAAAGAGTGACAAGAGTCATCATCGAACTGAAAGAAAACAAGAAGACAAAGAAGTGTTTGT GTCAACCAAACAAGTGGAAAAGCTTCGATCGGAACCGAAGGATTCTTGTGATATATTCACAGGAAAATGGGTTTTTGATAACAAAACACATCCTTTGTAC AGGGAGGATGAATGTCCTTATATCCAACAATGGATTTCATGCACAAAGAATGGAAGGCCGGATTCCATGTACCAGAGTTGGAGGTGGCAGCCAAAAGGTT GTTCTTTACCAAAGTTCAACGCAAAATTGTTCCTCGAGAAACTTAGAGGGAAAAGGCTTATGTTTGTTGGAGATTCGATACATCAAAATCAGTGGATGTC CCTGGTTTGTTTGGTTCAATCCGCCATTTCACCTGGCAAGAAGAGGACGACCTTTTCCACCTATAGCAACCGTTTCATCATTGAGGAGTACAATGCTACC ATTGAATCTTACTGGGCTCCGTTTCTAGTAAAGTCGAACGGAGACCCTCCAAAAATGAGGAACGGAGCATCGAACATTTCAATAATTTCTGATTCAATTT CGGAGAAGGGACAGAAGACTTGGAAGAGTACAGACTATCTCATCTTTGACACGTACGCCTGGTGGATCAAGCATCCCACTGTGAGACTGATACGAGGACC ATTTGACGAGAGGGCCAAGGAGTATGATGTAATCGAAGCACATGTAGCGTATGAAATATCGTTAAGGACATGGGCCAAGTGGGTTGACGAGCAAGTTGAT CCTAGTCGTACCGAAGTTTTCTTCAACAGCATGGCTCCTCTACATGTCAGGGCCTTGGACTGGAACAACGCAGATGCGGTTATGTGTGAGAAAGAGACTA CTCCAATTCTGAACATGTCCATACCATTGGAGGGTAGCAATGACCATCGATATTTTGCAATAGCAGAAAAGGTGATCCATTCAATGAAATTTCCAATCAA GTTTCTCAATATAACCACCCTCTCCGAGTATAGAAAAGATGCACATCCTTCTATTTATAACAAGGTGCCCTCACCGGAGCAGAAAGCAAATCCAGCCAAG TATTCCGACTGTGTTCACTGGTGTGTCCCTGGGCTGCCTGATACATGGAATGAGCTGCTCTACGCATACATCACCAACCAATATTGA
AA sequence Show only first row Show all	>Potri.008G070200.1 pacid=42807019 polypeptide=Potri.008G070200.1.p locus=Potri.008G070200 ID=Potri.008G070200.1.v4.1 annot-version=v4.1 MKQGKFGNLKLQHSKLVSSTVAIFLISLLPCFVFSEHTDSGSIPSHLKSDKSHHRTERKQEDKEVFVSTKQVEKLRSEPKDSCDIFTGKWVFDNKTHPLY REDECPYIQQWISCTKNGRPDSMYQSWRWQPKGCSLPKFNAKLFLEKLRGKRLMFVGDSIHQNQWMSLVCLVQSAISPGKKRTTFSTYSNRFIIEEYNAT IESYWAPFLVKSNGDPPKMRNGASNISIISDSISEKGQKTWKSTDYLIFDTYAWWIKHPTVRLIRGPFDERAKEYDVIEAHVAYEISLRTWAKWVDEQVD PSRTEVFFNSMAPLHVRALDWNNADAVMCEKETTPILNMSIPLEGSNDHRYFAIAEKVIHSMKFPIKFLNITTLSEYRKDAHPSIYNKVPSPEQKANPAK YSDCVHWCVPGLPDTWNELLYAYITNQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.002G080700 [exp]	1.00	0.9655
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.005G194900 [exp]	1.41	0.9645
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	2.44	0.9321	Pt-SEC14.2
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	4.47	0.9188
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.001G132900 [exp]	7.21	0.8912
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	9.79	0.9004
AT1G63770			Peptidase M1 family protein (....		Potri.001G102126 [exp]	10.00	0.8727
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.018G112400 [exp]	10.24	0.8993	Pt-AHA6.3
					Potri.013G151333 [exp]	10.48	0.8941
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033700 [exp]	11.66	0.8985

Compare expression of checked genes

Potri.008G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.