Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APC1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05560 1847 / 0 EMB2771, APC1 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187201 [exp] 88 / 3e-20 AT5G05560 67 / 4e-14 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028975 [exp] 2422 / 0 AT5G05560 1875 / 0.0 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1) Lus10007498 [exp] 2404 / 0 AT5G05560 1873 / 0.0 EMBRYO DEFECTIVE 2771, E3 ubiquitin ligase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12859 [poplar] [flax] ANAPC1 Anaphase-promoting complex subunit 1
Representative CDS sequence Show only first row Show all	>Potri.008G070300.6 pacid=42807561 polypeptide=Potri.008G070300.6.p locus=Potri.008G070300 ID=Potri.008G070300.6.v4.1 annot-version=v4.1 ATGGCCGTTAGGGTTTGTGAACTCACAGTTCTTGGAGAGTTCAAGCCATTTGGCCTGATTGCTGAAGCTCTGGACGGTAAACCTCCAGACACCGACCCTG ATGACTACGACTATTTCCTCTTCGATCCCGAAATCGCCCGAGACCGCAACGAAATCGACGAAACCGATACATGCGGCTCCGCGCTCAGAGATCGCAGCGA CCACGAGCTCTTCATTAGAGGAAACAAGATTATATGGTCTACTGGTGCAAGAGTTTTCAAGAGATTCACGTTGCCCTCCCCAGTTATCATGGCGTGCTGG TGTCATCTGGGTGATCTTTCTGAAGCTCTGCTTTGCATATTGCTTACTGATTCCTTAACAATATATAACATATCAGGTGAAGTAGTATCCATTCCCATCC CTTGTACTATCACATCAATATGGCCTCTTCCATTCGGTTTGCTACTCCAGTCAGCCTCTGAGAATTCCCCAATGCAAAATCACTTGTCATCCCCAAGCCC TTTATTTGGTGTGTGTGATATGTCCCGTGCTAAACGAGAGATTGTGCACAGCCCACACCATAACTTCGGTGTTTTGGGGACATTTGATCATGTGATCAAA GGAGATTCAGCTATAATGTCCTCACATCTCATTTTGAAGGACCTGTTGGAAGAGCCACATTTGATGCATGTTGAAGAAAGAGGAAAATTGACCATAATGA AGGATTTTGATGAAAGAACAATTTGGACTAGCAATCGAATTCCTCTAATGGCATCATATAATAAAGGGAAGATGCAGCATTCACTGTGGGTTGCTGAAAT CATCAATTCTAATTTTGAAGCCGAAAATGCCAGTCTAAGTGGTGCAGCTCTTGATGATGTATTAGATAAAAATTTCTCCTTTCGTAGAATATGGCAGGGG AAGGGTGCCCAGACAGCTGCTAGTAAGGTTTTTCTCGCGACTGACGATGATGCTGCTCCTGTTATTTGTTTTCTTCTTCAAGAACAGAAGAAGTTGTTGT CTGTAAAGCTTCAAAGTCTTGAAATTAATAATGAGATTATTTTTGATATCAAACCTGATGTGAGCTGGAGTGTTGCTGCAGTTGCAGCTGCACCTGTGAG TGTTACACACCCAAGAGTGAAAGTAGGACTCCTGCCTTATACAGACATTGTTGTTTTGGCTCCTGACAACTCGCTTCTCCTTATTTCAGGGAAGCAATTA TTGTGTAAGTATTTGTTGCCGTCTTTTTTTGGAAAAGGCCATCTTTCACATAATTTGGAATTCTCAGAGACTGCATCTGTTCCGCTTGACTCAAAGATTT TAGGATTGACTGATGCAGTGGAGGGGCGTGTTAATCTAATATTAAATAATGGCCAGATGTTTCGATGCACATTACGAAGAAGCCCTTCATCTTCATTAGT TAATGATTGCATCACAGCAATGGCTGAGGGGCTCAGTTCTGGCTTCTATAACCATTTCCTTGCTCTTCTCTGGGGAGATAGTAACTCTGACTATTTGTCT AGGGCCGATTCTAGTGTTGATTCTGAATGGAACTCATTTTGTAATATCATACTTCAAATGTGTAGGAAGCCTAGTGCCACTTCTCAGAAGCATTCGGACT TAGAGAACTTAGAGCAGCATTCATCCTGGGAGTTTCTTGTTAACAGCAAATTTCACAAGAACTACCATAAACTTAATTTTATCTCTAGGGTTTCTTCATC AGAATTGTCCTTTGATCCGGAGAAAATGGATTCCTTTGGATCAAATATGGAAGGTAATCGAAGTTCAGAAAACTCATTTTACTTTGAGCTATTACAGGAG AGCTTGGATTGTCTACATGCATTATATGAAAGTCTGAAACTGGATAAACTTCGCAAACGGGACTTGGAGCTTGTGGCAGTTCTTTTATGCAATATTGCCA AGTTTCTTGGTGAGGGAAATTATTTGGATCATTATATTCGTGATTTTCCTGGTCTGATTTCGAAAATTGGGACATGTGAGATGCCTTTCTCCCAGAAAAC TCCTCCTAGTTTATTCAGATGGCTTGAAAACTGCATGCAACATGGTTGTAGTTCTGCTAACACGGATGATCTTCCACCTTTAATTTGTAAAGATGGAAAC TTTGTTGTGAGCTGGGCAAGAAAGATAGTTTCCTTCTACAGTTTATTATGTGGTGGTAAACAAACAGGCAAGAAGCTGTCATCTGGTGTTTACTGTAATA TTGCTATGGGTTCATGTTGCACTAGTGAGGAGCTCACGGTTTTGGCAATGGTTGGGGAAAGATTTGGACTGCAGCAGCTTGACTCACTACCTTCTGGTGT ATCCCTTCCTCTGCGACATGCCCTAGACAAGTGCCGGGAATCCCCCCCAACTGATTGGTCTGCAGCTGCATATGTTCTTCTTGGTAGAGAGGATCTGGCT TTGTCTCGTTCAGCTCTGCCATGCAAATCTGGGGAACTTGAAACTCAACCCAATGTGAATCTGATCTCCATGTCGACACCTTACATGCTACATTTGCATC CGGTGACAATTCCTTCTACAGTTTCTGATACTACTGGACTGGAAAGTGCCAAGTTTGAAGATTCAGATTCTGCCGATGGGTCTATGATGGATGGTATGGA ACATATCTTCAACTCCAGCACTCAATTGCAGTATGGTCGAGATCAGCGGTTGAATGAGGTTAGACGACTCTTGTGCTCCACTAGACCTGTGGCTATCCAA ACATCTGTTAACCCCAGCGCCTCTGACCAGGATATACAGCAGGCTCAACTGTGGCACCTGGCACAAAGGACCACTGCTCTTCCTCTTGGCCGTGGGGCAT TTACTCTAGCAACCATATCTACCCTTTTAACAGAGGCCTTCACAGTGCCAAAGCTTGTTTTAGCAGGTCGGTTGCCGGCTCAACAAAATGCAACTGTAAA TCTAGACCCAAATATAAGGAATATACAAGAACTTAAATCTTGGTCAGAGTTTCACAATGCTGTTGCTGCTGGACTAAGGCTGGCTCCCCTTCAGGGAAAA GTGTCAAGGACATGGATAATATACAACAAACCTGAGGAACCAAATGCGATCCATGCTGGACTCCTCCTTGCATTAGGATTACATGGATATCTGCGTGTTT TAGTGATTAGCGACATATACACTTATTTCACACAGGAGCATGAAAGTACAACGGTAGGATTAATGCTTGGTCTGGCAGCTTCTTACAGGAAAACAATGCA CCCAGCAATATCAAAGTCTCTGTATTTTCATATACCTTCTCGGCATTCTTCTTCATTTCCGGATTTGGAGTTACCAACCCTTGTGCAGTCAGCAGCACTA GTTTCAGCTGGGCTTCTCTATGAGGGATCAGTTCACCCGCCGACAATGCAGATTCTTTTGGGAGAAATAGGCCGTAGAAGTGGAGGCGATAATGTACTTG AAAGAGAGGGTTATGCTGTTTCTGCAGGATTTTCTTTGGGTCTTGTTGCTTTGGGTCGAGGTGAAGATGCACTTGGTTTCTTGAACAGCTTGGTTGATCG ATTGTTCCAGTACATTGGTGGCAAGGAGATGCATAACGAAAGACCCCTTTTCTTGACACCATCAATGGATGAACAAAACCACGGTGCTGGACAGATGATG GATGGAACTGCAGTCAATGTTGATGTTACTGCACCTGGAGCTATCATTGCTCTTGCATTAATGTTTTTGAAGACCGAGTCAGAGGCAGTTGTATCAAGGC TTTCTATTCCTCAGACCCATTTTGATTTGCAATATGTGAGACCTGACTTCATAATGCTTCGTGTCATAGCTCGGAATCTGATAATGTGGAGCAGGGTGCA TCCATCCAATGATTGGATTCAGTCCCAGATTCCTAATATTGTCAAAAGTGGTGTTAATGGCCTTGAAGATCATGTTAATGACATGGATGAAATGGATGCA GAAACCTTTGTCCAGGCATATGTCAATATTGTGGCTGGAGCGTGTATTTCTCTTGGTTTGAGATTTGCTGGCACAAAGGATGGGAATGCGCAGGAATTAC TCTATGAATATGCTGTTTACTTTCTAAATGAGATCAAGCATGTTTGTGCTACAAGTGGAAATGCCTTTCCAAAGGGATTGTCTCGTTATGTTGACCGTGG CACTTTGGAAATATGCCTTCATCTCATTGTTCTTTCATTGTCTGTGGTTATGGCTGGTTCTGGACATCTACAAACATTTCGATTATTGAGATTTCTCCGC AGTCGCAACTCTGCAGATGGTCATGCTAATTATGGCACTCAGATGGCTGTAAGCTTGGCAATTGGTTTTTTGTTTCTCGGGGGAGGGATGCGGACATTTT CCACAAGCAACAGTTCGATTGCTGCTTTACTTATTACTCTGTATCCACGTTTGCCCACTGTACCAAATGATAATCGTTGCCACCTTCAGGCATTCAGGCA TTTATACGTCCTTGCAACAGAGGCTCGATTGCTTCAGACTGTTGATGTTGACAGTGGTCTGCCTGTCTATGCCCCTGTTGAAGTTACTGTCAGGGAAACT GAACATTATTCAGAAACAAGTTTTTGTGAAGTTACCCCTTGTATTTTGCCAGAACGTGCTATTTTGAAGAGTGTACGTGTTTGTGGCCCTCGGTATTGGC CTCAAGTAATGGAGCTTGTTCCTGAAGATAAACCTTGGTGGAGCATTGGGGAAACGAATGACCCATTTAATTCTGGTGTCATCTACATCAAACGGAAGGT TGGAGCTTGTTCATATGTTGATGATCCCATAGGGTGCCAATCACTGTTATCACGAGCAATGCACAAGGTTTTTGGTTTGACGAATATAAAAGTGGGTGAT CCAAGTACCAGTGACCATAGTGGACCAGGTTCTGTTACAGTTGATCAGCTAGTCAGCGCCTTCTCTTCTGATCCTAGCTTAATTGCCTTTGCACAGCTCT GCTGTGACCCGTCTTGGAATTGCAAATCTGATGTTGAATTCCAGGAATTTTGCTTGCAAGTATTATTTGAGTGCATTAGCAAAGACAGACCAGCTCTTCT ACAGGTATATTTATCATTATATACTACAATTGGTTCAATGACTGACCAAGTTACAAATGGTACTTTTATTCTTGGAGATTCACTCGCTTTGTCTAGCTTA AAGCTAGCTTTAACTTATAACGAGGCCCTTCTCAGTGGAAGACTGACTACACCAAGAGGTAGCATTATTCAATCTGTCTTTCTAGGATCACTTAAAAAGC GGGTGGAAGAGCTGCTACATTGTTCAGAGGGATTGAAAATTGATTTTTGCAACTACTTGAATTTTGGGAGATGGCCCAATGATCAAACAGAGGGAGAGAA AAATTCTGTGCTTCTATCTTGGTATCTTCAATGGTTTGCAGTACCATCATCGTCCATAATCAAGACAGCGATGGAGAGAGTTAAGCCCAAGCTTGTGTCA GCATCTTCGGTTCCCTTGCTGCGTTTGTTATTGCCAAGAACTCACATCAATGCAATTGGTGAGATAGATAAATTATTGGTTTCTCCCCAAGTCAGTGGAT GA
AA sequence Show only first row Show all	>Potri.008G070300.6 pacid=42807561 polypeptide=Potri.008G070300.6.p locus=Potri.008G070300 ID=Potri.008G070300.6.v4.1 annot-version=v4.1 MAVRVCELTVLGEFKPFGLIAEALDGKPPDTDPDDYDYFLFDPEIARDRNEIDETDTCGSALRDRSDHELFIRGNKIIWSTGARVFKRFTLPSPVIMACW CHLGDLSEALLCILLTDSLTIYNISGEVVSIPIPCTITSIWPLPFGLLLQSASENSPMQNHLSSPSPLFGVCDMSRAKREIVHSPHHNFGVLGTFDHVIK GDSAIMSSHLILKDLLEEPHLMHVEERGKLTIMKDFDERTIWTSNRIPLMASYNKGKMQHSLWVAEIINSNFEAENASLSGAALDDVLDKNFSFRRIWQG KGAQTAASKVFLATDDDAAPVICFLLQEQKKLLSVKLQSLEINNEIIFDIKPDVSWSVAAVAAAPVSVTHPRVKVGLLPYTDIVVLAPDNSLLLISGKQL LCKYLLPSFFGKGHLSHNLEFSETASVPLDSKILGLTDAVEGRVNLILNNGQMFRCTLRRSPSSSLVNDCITAMAEGLSSGFYNHFLALLWGDSNSDYLS RADSSVDSEWNSFCNIILQMCRKPSATSQKHSDLENLEQHSSWEFLVNSKFHKNYHKLNFISRVSSSELSFDPEKMDSFGSNMEGNRSSENSFYFELLQE SLDCLHALYESLKLDKLRKRDLELVAVLLCNIAKFLGEGNYLDHYIRDFPGLISKIGTCEMPFSQKTPPSLFRWLENCMQHGCSSANTDDLPPLICKDGN FVVSWARKIVSFYSLLCGGKQTGKKLSSGVYCNIAMGSCCTSEELTVLAMVGERFGLQQLDSLPSGVSLPLRHALDKCRESPPTDWSAAAYVLLGREDLA LSRSALPCKSGELETQPNVNLISMSTPYMLHLHPVTIPSTVSDTTGLESAKFEDSDSADGSMMDGMEHIFNSSTQLQYGRDQRLNEVRRLLCSTRPVAIQ TSVNPSASDQDIQQAQLWHLAQRTTALPLGRGAFTLATISTLLTEAFTVPKLVLAGRLPAQQNATVNLDPNIRNIQELKSWSEFHNAVAAGLRLAPLQGK VSRTWIIYNKPEEPNAIHAGLLLALGLHGYLRVLVISDIYTYFTQEHESTTVGLMLGLAASYRKTMHPAISKSLYFHIPSRHSSSFPDLELPTLVQSAAL VSAGLLYEGSVHPPTMQILLGEIGRRSGGDNVLEREGYAVSAGFSLGLVALGRGEDALGFLNSLVDRLFQYIGGKEMHNERPLFLTPSMDEQNHGAGQMM DGTAVNVDVTAPGAIIALALMFLKTESEAVVSRLSIPQTHFDLQYVRPDFIMLRVIARNLIMWSRVHPSNDWIQSQIPNIVKSGVNGLEDHVNDMDEMDA ETFVQAYVNIVAGACISLGLRFAGTKDGNAQELLYEYAVYFLNEIKHVCATSGNAFPKGLSRYVDRGTLEICLHLIVLSLSVVMAGSGHLQTFRLLRFLR SRNSADGHANYGTQMAVSLAIGFLFLGGGMRTFSTSNSSIAALLITLYPRLPTVPNDNRCHLQAFRHLYVLATEARLLQTVDVDSGLPVYAPVEVTVRET EHYSETSFCEVTPCILPERAILKSVRVCGPRYWPQVMELVPEDKPWWSIGETNDPFNSGVIYIKRKVGACSYVDDPIGCQSLLSRAMHKVFGLTNIKVGD PSTSDHSGPGSVTVDQLVSAFSSDPSLIAFAQLCCDPSWNCKSDVEFQEFCLQVLFECISKDRPALLQVYLSLYTTIGSMTDQVTNGTFILGDSLALSSL KLALTYNEALLSGRLTTPRGSIIQSVFLGSLKKRVEELLHCSEGLKIDFCNYLNFGRWPNDQTEGEKNSVLLSWYLQWFAVPSSSIIKTAMERVKPKLVS ASSVPLLRLLLPRTHINAIGEIDKLLVSPQVSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	0	1	APC1.1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.006G065000 [exp]	1.00	0.8546	Pt-ATMAK10.3
AT3G04820			Pseudouridine synthase family ...		Potri.005G051400 [exp]	5.91	0.8360
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	7.41	0.8398
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	8.12	0.8489
AT3G06530			ARM repeat superfamily protein...		Potri.003G151500 [exp]	9.79	0.8293
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Potri.001G320300 [exp]	12.24	0.8090	RAD50.1
AT3G56120			S-adenosyl-L-methionine-depend...		Potri.018G072200 [exp]	13.56	0.7960
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	13.85	0.8135
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	14.83	0.8420
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	15.09	0.7904

Compare expression of checked genes

Potri.008G070300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.