Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40180 365 / 1e-124 ATHPP2C5 phosphatase 2C5 (.1) AT1G07160 357 / 8e-122 Protein phosphatase 2C family protein (.1) AT2G30020 355 / 6e-121 Protein phosphatase 2C family protein (.1) AT1G67820 245 / 3e-77 Protein phosphatase 2C family protein (.1) AT4G08260 234 / 6e-76 Protein phosphatase 2C family protein (.1) AT3G27140 208 / 2e-65 Protein phosphatase 2C family protein (.1) AT2G05050 182 / 4e-56 Protein phosphatase 2C family protein (.1) AT5G10740 183 / 2e-54 Protein phosphatase 2C family protein (.1) AT4G31750 181 / 2e-54 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 181 / 1e-52 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187000 [exp] 563 / 0 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.009G073000 [exp] 397 / 6e-137 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1) Potri.001G278500 [exp] 390 / 1e-134 AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 274 / 1e-88 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 268 / 4e-86 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.010G047600 [exp] 244 / 5e-77 AT1G67820 399 / 2e-136 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 194 / 2e-59 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 191 / 5e-58 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.015G019200 [exp] 168 / 9e-49 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042275 [exp] 338 / 2e-114 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10026381 [exp] 329 / 5e-111 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10041072 [exp] 233 / 5e-74 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1) Lus10036871 [exp] 229 / 3e-71 AT1G67820 380 / 1e-129 Protein phosphatase 2C family protein (.1) Lus10006222 [exp] 229 / 6e-71 AT1G67820 382 / 6e-130 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 187 / 3e-57 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 187 / 4e-57 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 178 / 6e-53 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 179 / 2e-52 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10026908 [exp] 174 / 7e-52 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.008G070400.1 pacid=42806784 polypeptide=Potri.008G070400.1.p locus=Potri.008G070400 ID=Potri.008G070400.1.v4.1 annot-version=v4.1 ATGTCATGCACTGTAGCATGGGCGATTCCAAACTCACCAGCATTTCAATCACCGAGACTTCCTTCAATATTTTGCAAGCCATCTCCATCTCCTAGCATCA TCCATGGTCCACAATCCCCGGCACCATCATCGTCTTTATCGTTGCCACCGTCTTCTTTATCATCGTTTTCACCGGGGCTGTCCTCACCAAAGTCACCTTT ATCTCTTCGAGTTAACAAGACAAAATTAGAATCAAAGACTGACAAGTTGTTGAAGAGGAAGAGGCCGGGAATATTAGATATACCAGTGGCGGGAGTTTTG GGGTTTGGTTTAGAGACCCCAAAAGGAAAGAAGGAGAAAGTGGAGGTTGTAGAAGTTGAAGGAGATGGTTATTTTGTCTGTAGCAAGAGAGGACGGAGAG GTGGGATCTTGGAGGACCGGTACTCTGTTTTTGTTGATGTTAATGGATATTCTAAACAGGCTTTGTTTGGTGTTTTTGATGGGCATGGAGGGCCAAAAGC GGCTGAATTTGCAGCCAAGAATTTGAATAAAAACATCATGGATGAAGTTTCGAGTAGATGTCAAGAGGGAACTGAAACAGCAATTAGAAATGGCTACTTG ACCACAGACGAAGAGTTTTTAAAACAAAATGTTAATGGTGGTGCTTGTTGTGTGACTGCATTGATACACCAAGGCAACCTTGTGGTTTCAAATACTGGTG ATTGCCGTGCAGTTATGAGTCGAGGAGGGGTTGCAGAGGCTCTCACGTCTGATCACCAACCTTCGCGCAAAGATGAGAAAGACAGAATCGAAGCCTTAGG TGGTTATGTAGATTGTTGCCATGGTGTGTGGAGAATACAGGGGTCACTTGCTGTAACAAGAGGGATTGGAGATGGACATCTAAAACGATGGGTGATAGCA GAACCAGAGACCAAAGTTTTAAAGATTAAGCCCGAATGCGAGTTCTTGATATTAGCGTCGGATGGTCTTTGGGACAAGGTTACTAATCAGGAGGCAGTAG ATGTAGTTCACCCCTCATGCGTGGGTGTTGACAAGCTAGATCCTTTATCTGCCTGTAAAAAGCTAGTCGACTTGTCATTAAGCAGGGGCTCGGTTGATGA TACTAGTGTGATGATAATTCAATTAGATCGCTTTGTTCCATAA
AA sequence Show only first row Show all	>Potri.008G070400.1 pacid=42806784 polypeptide=Potri.008G070400.1.p locus=Potri.008G070400 ID=Potri.008G070400.1.v4.1 annot-version=v4.1 MSCTVAWAIPNSPAFQSPRLPSIFCKPSPSPSIIHGPQSPAPSSSLSLPPSSLSSFSPGLSSPKSPLSLRVNKTKLESKTDKLLKRKRPGILDIPVAGVL GFGLETPKGKKEKVEVVEVEGDGYFVCSKRGRRGGILEDRYSVFVDVNGYSKQALFGVFDGHGGPKAAEFAAKNLNKNIMDEVSSRCQEGTETAIRNGYL TTDEEFLKQNVNGGACCVTALIHQGNLVVSNTGDCRAVMSRGGVAEALTSDHQPSRKDEKDRIEALGGYVDCCHGVWRIQGSLAVTRGIGDGHLKRWVIA EPETKVLKIKPECEFLILASDGLWDKVTNQEAVDVVHPSCVGVDKLDPLSACKKLVDLSLSRGSVDDTSVMIIQLDRFVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40180		ATHPP2C5	phosphatase 2C5 (.1)		Potri.008G070400 [exp]	0	1
AT2G39110			Protein kinase superfamily pro...		Potri.010G225300 [exp]	1.41	0.7970
AT1G07870			Protein kinase superfamily pro...		Potri.009G026500 [exp]	3.46	0.7519
					Potri.015G131300 [exp]	5.47	0.7376
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105000 [exp]	7.93	0.7436
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G025100 [exp]	18.16	0.7822
AT4G24290			MAC/Perforin domain-containing...		Potri.019G001000 [exp]	23.36	0.7285
AT5G47220	AP2_ERF	ATERF-2, ERF2, ...	ETHYLENE RESPONSE FACTOR- 2, e...		Potri.004G051700 [exp]	25.33	0.7613
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.008G106700 [exp]	25.37	0.7084
AT3G50520			Phosphoglycerate mutase family...		Potri.007G040700 [exp]	26.45	0.6493
AT2G14860			Peroxisomal membrane 22 kDa (M...		Potri.001G296400 [exp]	30.33	0.7148

Compare expression of checked genes

Potri.008G070400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.