Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11130 3139 / 0 Clathrin, heavy chain (.1) AT3G08530 3129 / 0 Clathrin, heavy chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G186900 [exp] 3282 / 0 AT3G11130 3104 / 0.0 Clathrin, heavy chain (.1) Potri.009G073300 [exp] 3122 / 0 AT3G11130 3006 / 0.0 Clathrin, heavy chain (.1) Potri.001G278800 [exp] 3092 / 0 AT3G11130 2982 / 0.0 Clathrin, heavy chain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030393 [exp] 1399 / 0 AT3G08530 1518 / 0.0 Clathrin, heavy chain (.1) Lus10028976 [exp] 1268 / 0 AT3G08530 1258 / 0.0 Clathrin, heavy chain (.1) Lus10037845 [exp] 1186 / 0 AT3G08530 1395 / 0.0 Clathrin, heavy chain (.1) Lus10007499 [exp] 1115 / 0 AT3G08530 1152 / 0.0 Clathrin, heavy chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00637 [poplar] [flax] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Potri.008G070600.1 pacid=42808807 polypeptide=Potri.008G070600.1.p locus=Potri.008G070600 ID=Potri.008G070600.1.v4.1 annot-version=v4.1 ATGGCGGCAGCTAACGCCCCGATCACCATGAAAGAAGTCTTAACTTTACCGTCTATCGGTATTAGCCCTCAATTTATTACGTTTACGAATGTAACGATGG AATCGGACAAGTATATATGTGTACGTGAAACAGCTCCGCAAAATAGTGTTGTAATTATTGACATGCACATGCCAATGCAACCGCTGAGACGGCCTATCAC TGCAGATTCTGCACTCATGAATCCAAATTCTAGAATCCTTGCTTTGAAAGCCCAACTTCCAGGAACTACTCAGGATCACTTGCAAATATTTAACATTGAG ATGAAAGCAAAAATGAAGTCATACCAGATGCCTGAGCAGATTGTCTTTTGGAAGTGGATAACCCCAAAGATGCTGGGCCTGGTCACACAGACCTCTGTTT ATCATTGGTCAATTGAAGGTGATTCTGAACCAGTGAAGATGTTTGAAAGAACAGCTAATTTGCAAAGCAATCAGATTATAAACTATAAATGTGACCCTTC TGAGAAATGGTTGGTTTTGATTGGAATTGCTCCTGGTTCACCTGAGAGGCAACAATTGGTTAAAGGGAACATGCAACTTTTCTCTGTGGATCAACAACGT AGCCAAGCTCTTGAAGCACATGCTGCATCATTTGCGCAATTTAAGGTTCCAGGAAATGAGAACCCTTCCACTCTCATTTCTTTTGCCACAAAATCTTTCA ATGCTGGACAGGTTACATCGAAGTTGCATGTTATTGAGCTTGGTGCCCAGCCAGGGAAGCCATCATTTACAAAGAAACAGGCAGATCTGTTCTTTCCTCC TGATTTTGTCGATGACTTTCCTGTGGCAATGCAGATATCCCACAAATACAGTTTGATTTATGTGATCACAAAGCTTGGGCTACTATTTGTTTACGATTTG GAGACAGCTACTGCTGTGTACAGAAACAGAATTAGTCCAGATCCAATATTTTTGACAGCCGAGGCTTCAGTGGTGGGGGGGTTTTATGCCATTAATAGGC GAGGCCAGGTGTTACTTGCTACTGTAAACGAGGCTATGATTGTGCCATTTGTTAGTGGCCAGTTGAACAATCTGGAGCTTGCTGTCAATCTTGCCAAAAG AGGAAACCTTCCTGGTGCTGAGAATCTGGTTGTCCAGCGTTTCCAAGAACTGTTTGCTCAAACAAAGTATAAAGAAGCCGCTGAGCTTGCTGCTGAGTCT CCACAAGGAATTCTCCGAACTCCTGACACAGTTGCCAAGTTTCAGAGTGTACCTGTGCAACCTGGGCAAACTCCTCCCTTATTACAATATTTTGGGACCC TTTTAACAAGAGGAAAGCTCAATGCATTTGAGTCGTTGGAATTGTCCCGCCTTGTGGTCAATCAGAACAAAAAGAACCTTTTGGAGAACTGGCTGGCAGA GGACAAATTGGAGTGCACCGAGGAACTGGGAGACCTTGTGAAGACTGTGGATAATGATCTTGCGCTGAAAATATATATTAAAGCCAGGGCAACTCCTAAA GTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAAATCTTGATTTACTCAAAGCAGGTTGGGTATTCTCCTGACTATTTGTTCCTTCTGCAAGCAA TGCTCCGTTCAGATCCACAGGGAGCAGTTAACTTTGCTTTGATGATGTCCCAAATGGAAGGTGGCTGTCCAGTTGACTACAACACAATTACTGATCTGTT TCTTCAGAGAAACTTGATCCGCGAGGCAACAGCCTTTCTGTTGGATGTTTTGAAGCCAAATTTACCAGAACACGGTTACCTCCAAACAAAGGTTCTGGAG ATAAATCTGGTAACATTTCCTAATGTAGCTGATGCTATTCTAGCCAATGGAATGTTTAGCCACTACGATCGTCCTCGAATTGCACAACTCTGTGAAAAAG CTGGTCTCTACATCCGAGCCCTGCAACATTATACAGAGTTGCCTGATATTAAACGTGTGATTGTGAATACACATGCAATAGAGCCACAGGCTCTTGTTGA GTTTTTTGGAACTCTTTCACGAGAATGGGCTTTGGAATGCATGAAGGATCTTTTACTGGTCAATCTAAGAGGCAACCTTCAGATAATTGTTCAGGCTGCC AAGGAATATTGTGAGCAGTTGGGTGTTGATGCATGCGTTAAACTTTTTGAGCAATTCAAGTCATATGAAGGGCTGTACTTTTTCTTGGGGTCATATCTGA GTTCCAGTGAGAATCCTGATATACATTTTAAGTACATCGAGGCTGCTGCTAGAACAGGACAAATAAAGGAGGTTGAGCGTGTTACTAGAGAATCGAATTT TTATGATCCTGAAAAGACAAAGAACTTTCTAATGGAAGCCAAACTTCCAGATGCAAGGCCTTTGATTAATGTTTGTGACCGGTTTGGCTTTGTTGCTGAT CTCACTCACTACCTCTACTCAAACAACATGCTACGCTATATAGAAGGTTATGTTCAAAAGGTGAACCCAGGGAATGCACCTTTAGTTGTGGGGCAGCTGT TAGATGATGAATGCCCTGAAGACTTTATCAAGGGTCTTATTCTTTCTGTCCGTTCTTTGCTTCCAGTTGAGCCCCTTGTGGAGGAATGTGAGAAGAGAAA TCGACTTCGTTTGCTTACTCAATTCTTGGAACATCTTGTGAGTGAGGGAAGCCAAGATGTACATGTTCATAATGCTCTTGGTAAAATCATTATTGATAGC AATAACAACCCAGAACACTTCCTTACCACCAACCCTTACTATGATTCACGGGTTGTGGGCAAGTATTGTGAGAAACGTGATCCCACCCTGGCTGTTGTGG CATACCGGAGAGGACAATGCGATGATGAACTCATCAATGTCACAAATAAGAACTCTTTGTTCAAGTTGCAAGCAAGATATGTGGTTGAAAGGATGGACGG TGATCTTTGGGAGAAGGTTCTTAATCCTGAAAATGAATACCGAAGACAGCTTATTGATCAAGTTGTATCTACTGCTTTGCCAGAAAGCAAGAGCCCAGAA CAAGTTTCTGCTGCTGTTAAAGCTTTCATGACAGCTGATCTGCCCCATGAATTGATTGAGCTTCTTGAAAAGATTGTTCTCCAAAACTCTGCTTTCAGTG GAAATTTCAATCTTCAAAACTTACTTATCTTGACAGCAATTAAGGCAGATCCTTCAAGGGTCATGGATTATATTAATAGATTAGATAACTTTGATGGACC TGCTGTTGGGGAAGTGGCAGTTGAAGCTCAGTTATATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTGAATGTTCAGGCTGTTGATGTCTTATTG GATAACATCCAAAGCATTGACCGTGCTGTGGAGTTTGCATTCCGTGTTGAAGAAGATGCTGTTTGGAGCCAGGTGGCGAAGGCCCAACTCAGAGAGGGGC TCTTGAGTGATGCAATTGAGTCATTTATCCGTGCAGATGATGCTACTCAATTCCTGGAAGTCATTCGTGCTGCTGAGGATGCAAATGTATATCATGACTT GGTGAAGTACCTTCTCATGGTTAGGCAGAAGGCAAAAGAGCCGAAGGTGGACAGTGAGCTTATTTTTGCATATGCGAAGACTGATAAGTTGACTGACATT GAGGAGTTCATTCTCATGCCTAATGTGGCTAATCTCCAAAATGTTGGTGATCGCTTATATAACGAAACTCTATATGAGGCTGCAAGAATAATATTCCAAT TTATAGCAAACTGGGCCAAATTGGCAATCACATTAGTGAAGTTGAAACAGTTCCAAAGTGCTGTTGATGCAGCTCGGAAAGCCAACAGTGCGAAGACATG GAAGGAAGTTTGCTTTGCTTGTGTTGATGCCGAGGAGTTCCGTTTGGCTCAGATATGTGGTCTTAACATCATTATACAGGTGGATGATTTGGAGGAGGTC AGTGAATATTACCAGAACAGAGGATACTTCAATGAATTGATCTCTCTCATGGAGAGTGGTTTAGGTTTAGAACGTGCACATATGGGCATTTTCACAGAGT TGGGAGTGCTGTATGCTAGATATCGTCCTGAGAAGCTTATGGAGCACATTAAATTATTCTCAACTCGTCTCAATATTCCCAAGCTTATACGAGCATGTGA TGAACAGCAACATTGGAAGGAACTTACCTATCTGTACATTCAATATGATGAATTTGATAATGCTGCAACTACCATTATGAACCATTCTCCTGAGGCCTGG GATCACATGCAATTCAAAGATGTTGCTGTCAAAGTTGCTAACGTGGAGCTATATTATAAGGCTGTGCATTTCTACTTGCAAGAACATCCTGATCTTATCA ATGATCTTCTCAATGTGCTGGCACTCCGTGTGGACCATACTCGTGTTGTTGACATAATGCGAAAGGCAGGTCATTTGCTTCTTGTGAAGCCATATATGAT TGCAGTTCAGAGCAACAATGTGTCTGCTGTGAATGAGGCTTTGAATCAAATTTACATGGAGGAGGAAGACTATGAAAGATTGCGTGAATCCATTGATTTG CACGATAACTTTGATCAGATAGGCCTTGCACAGAAGGTTGAGAAACATGAGCTTCTTGAAATGAGACGTGTGGCTGCATACATTTACAAGAAGGCTGGAA GATGGAAGCAATCCATTGCATTGTCAAAGAAAGATAACCTATACAAAGATGCCATGGAGACAGCATCACAGTCTGGTGATCGTGAACTTGCAGAGGAGTT GCTGGTTTATTTCATCGAAAAGGGCAAGAAGGAATGCTTTGCATCATGCCTCTTTGTTTGTTATGATTTAATTCGGCCAGACATTGCCCTTGAGCTTGCC TGGATGAATAATATGATCGACTTTGCCTTCCCATACCTTTTGCAGTTTGTTCGTGAATACACGGGCAAAGTTGATGAACTTGTGAAGGACAAAATTAATG CACAGAATGAAGTCAAGACCAAAGAGCAGGAAGAGAAGGATGTCATTGCTCAGCAGAACATGTATGCTCAGTTACTTCCTCTTGCTTTGCCCGCGCCGCC AATGCCTGGTATGGGTGGACCAACAATGGGAGGAGGTTTTGCTCCACCACCACCCATGGGTGGAATGGGGATGCCTCCAATGCCACCTTTTGGCATGCCA CCAATGGGCAGCTATTGA
AA sequence Show only first row Show all	>Potri.008G070600.1 pacid=42808807 polypeptide=Potri.008G070600.1.p locus=Potri.008G070600 ID=Potri.008G070600.1.v4.1 annot-version=v4.1 MAAANAPITMKEVLTLPSIGISPQFITFTNVTMESDKYICVRETAPQNSVVIIDMHMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIE MKAKMKSYQMPEQIVFWKWITPKMLGLVTQTSVYHWSIEGDSEPVKMFERTANLQSNQIINYKCDPSEKWLVLIGIAPGSPERQQLVKGNMQLFSVDQQR SQALEAHAASFAQFKVPGNENPSTLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFVDDFPVAMQISHKYSLIYVITKLGLLFVYDL ETATAVYRNRISPDPIFLTAEASVVGGFYAINRRGQVLLATVNEAMIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAES PQGILRTPDTVAKFQSVPVQPGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECTEELGDLVKTVDNDLALKIYIKARATPK VVAAFAERREFDKILIYSKQVGYSPDYLFLLQAMLRSDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLE INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYTELPDIKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQAA KEYCEQLGVDACVKLFEQFKSYEGLYFFLGSYLSSSENPDIHFKYIEAAARTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVAD LTHYLYSNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLNPENEYRRQLIDQVVSTALPESKSPE QVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVDVLL DNIQSIDRAVEFAFRVEEDAVWSQVAKAQLREGLLSDAIESFIRADDATQFLEVIRAAEDANVYHDLVKYLLMVRQKAKEPKVDSELIFAYAKTDKLTDI EEFILMPNVANLQNVGDRLYNETLYEAARIIFQFIANWAKLAITLVKLKQFQSAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEV SEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAW DHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMIAVQSNNVSAVNEALNQIYMEEEDYERLRESIDL HDNFDQIGLAQKVEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIEKGKKECFASCLFVCYDLIRPDIALELA WMNNMIDFAFPYLLQFVREYTGKVDELVKDKINAQNEVKTKEQEEKDVIAQQNMYAQLLPLALPAPPMPGMGGPTMGGGFAPPPPMGGMGMPPMPPFGMP PMGSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11130			Clathrin, heavy chain (.1)		Potri.008G070600 [exp]	0	1
AT5G58510			unknown protein		Potri.009G076000 [exp]	2.00	0.8624
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	2.82	0.8407
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	4.00	0.8525
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	4.24	0.8448
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	6.55	0.8747	Pt-VPS33.2
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	9.53	0.8434	XIB.1
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.002G131400 [exp]	9.94	0.8547
AT2G45540			WD-40 repeat family protein / ...		Potri.014G072600 [exp]	10.53	0.7937
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	10.95	0.8496
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.005G157400 [exp]	10.95	0.8089

Compare expression of checked genes

Potri.008G070600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.