Plant FIBer expression Database

Potri.008G070700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56010 171 / 1e-53 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G186800
[exp]
412 / 2e-148 AT3G56010 172 / 6e-54 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040939
[exp]
198 / 5e-64 AT3G56010 172 / 2e-54 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G070700.1 pacid=42806566 polypeptide=Potri.008G070700.1.p locus=Potri.008G070700 ID=Potri.008G070700.1.v4.1 annot-version=v4.1
ATGTCAATTTCTCTAAATTCTGCTGTTGGCTTCAACTCAACGCTGCAAACCAAATACCATCATGTGTCTAGACCAAAGGCCGCCTCCTTGGGTATGCTTG
CTTCAAGGATACAAATAAATGGAAGAAGAAGAGGGTTATTTGTTTCAGCTGTGGATAATGATCGTCTTGTCACAGACACCGGCGTTAAGGGTCATGGAGG
TGCTGAGAGCTCAATTTATGACAATCAGCTGTCAGCAGTGAATTCCCCAATTGAGGATTCTCCAGTAGGAAACAATGTTGGTGAGGAGTCAGGACCTCAA
ACCTCTGGAGCTTCCAATAGCTCAACAATTTCGGTGGATATGAAGTCTAGGCCAAAAAGGTCGCCTCTAACAGCAAGAGAGAGACTAAAGGCTGCGAGAG
TTATCAGCCGTTACACAGAATCAAAGACATCAAAATCAGAGATGGGCAGGAAAGTATTGGATGCCCTGAGAGAGAGTGACAAGGGCAAGAAAAGATCTGG
CCTTCCAGAAGCTCCTGAAAACTTGTTTGATGACAGCAAGCGAGGGTTGCCAAAGGAGGGATGGACCTTTCAATTTCCAGGGGGTTCAGAACTCTTTTTC
ATTGTCATTTCATTTGTTTTGATCAGCACAATAATGTTTGCAACGACTTATATTGTCTGGAAAGTTGGTGCAATCCATTTTGATGAGTATTAA
AA sequence
>Potri.008G070700.1 pacid=42806566 polypeptide=Potri.008G070700.1.p locus=Potri.008G070700 ID=Potri.008G070700.1.v4.1 annot-version=v4.1
MSISLNSAVGFNSTLQTKYHHVSRPKAASLGMLASRIQINGRRRGLFVSAVDNDRLVTDTGVKGHGGAESSIYDNQLSAVNSPIEDSPVGNNVGEESGPQ
TSGASNSSTISVDMKSRPKRSPLTARERLKAARVISRYTESKTSKSEMGRKVLDALRESDKGKKRSGLPEAPENLFDDSKRGLPKEGWTFQFPGGSELFF
IVISFVLISTIMFATTYIVWKVGAIHFDEY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56010 unknown protein Potri.008G070700
[exp]
0 1
AT2G04039 unknown protein Potri.014G172800
[exp]
2.44 0.9703
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800
[exp]
5.47 0.9564
AT5G05580 AtFAD8, SH1, FA... fatty acid desaturase 8 (.1.2) Potri.006G101500
[exp]
6.32 0.9474 FAD3.2
AT1G78510 SPS1 solanesyl diphosphate synthase... Potri.001G380500
[exp]
6.32 0.9536
AT2G13360 SGAT, AGT1, AGT L-serine:glyoxylate aminotrans... Potri.001G253300
[exp]
7.21 0.9593 Pt-AGT.2
AT2G05620 PGR5 proton gradient regulation 5 (... Potri.008G171000
[exp]
8.83 0.9504 PGR5.2
AT1G07010 AtSLP1 Shewenella-like protein phosph... Potri.009G077900
[exp]
9.21 0.9535
AT3G27770 unknown protein Potri.001G347400
[exp]
10.86 0.8950
AT5G62680 Major facilitator superfamily ... Potri.012G071500
[exp]
12.12 0.9373
AT4G12060 Double Clp-N motif protein (.1... Potri.001G115500
[exp]
12.48 0.9083

Potri.008G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.