Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05550 208 / 6e-67 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 189 / 1e-59 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G58630 105 / 1e-26 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G14180 105 / 7e-26 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT1G54060 90 / 2e-20 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G24490 81 / 1e-17 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G54390 79 / 9e-17 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 65 / 1e-11 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT2G44730 53 / 6e-08 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 49 / 2e-06 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G186200 [exp] 293 / 3e-100 AT5G05550 149 / 3e-44 sequence-specific DNA binding transcription factors (.1.2) Potri.001G113600 [exp] 115 / 4e-30 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 114 / 4e-30 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.001G026000 [exp] 111 / 3e-28 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G056000 [exp] 109 / 2e-27 AT3G24490 205 / 8e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.T126206 [exp] 106 / 2e-26 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 104 / 9e-26 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.001G179800 [exp] 102 / 1e-24 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.018G075500 [exp] 84 / 2e-18 AT3G24490 252 / 1e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013179 [exp] 121 / 8e-32 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10008141 [exp] 120 / 2e-31 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10028985 [exp] 110 / 4e-30 AT5G05550 95 / 1e-24 sequence-specific DNA binding transcription factors (.1.2) Lus10025406 [exp] 113 / 1e-29 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 112 / 3e-29 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 108 / 4e-29 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 110 / 9e-29 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 99 / 4e-23 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035893 [exp] 93 / 2e-21 AT3G24490 214 / 1e-66 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10028984 [exp] 87 / 2e-21 AT3G14180 86 / 7e-21 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G071300.3 pacid=42806542 polypeptide=Potri.008G071300.3.p locus=Potri.008G071300 ID=Potri.008G071300.3.v4.1 annot-version=v4.1 ATGGACCCCAGCCCCTCCGCCGCCATAACCCGGCCTCACCACGGTGGCCGCGAAGATTGTTGGAGCGATGGCGCCACTGGGACACTAGTCGAAGCCTGGG GTGACCGTTACATAAATCTTAACAGAGGTAACCTCCGTCAAAAAGACTGGAAAGAAGTCGCTGACGCCGTCAACAACCGTCAAAACGGCGTCAAACCTAG AAAGACCGACATCCAGTGTAAAAACCGAATCGACACGTTGAAGAAAAAATACAAGATCGAAAAATCCAAGCCCCCTCCGTCGACTTGGCCGTTTTATTAT CGTCTCGATTCTCTCCTCGGCACTAACAGTAACGCTACTAACACTTTCAAGAAACCTACCTCCGTTACTTTCACGGTGAAGTCAAAGACAAAGCCTCAAA ATGATGTTTATCCAGGCTTGGCAAGTTGTGGGGAGAGCTCTTCTGACGACGACGATATGGCGTGGTTTGATGAGAGAGTGAAAAAGAAACGGCATAGAAT GGAGGATGTAGATTTATCTGATGGGGCTGCGTGTAGGGAATTAGCGAGAGCGATATTGAAGTTTGGAGAGATATATGAGAGAATTGAGAGTTCGAAACAG CAGCAAATGATAGAGTTGGAGAAACAGAGAATGGAGTTTACTAAAGAAGTTGAGTTTGAAAGAATGAATTTGTTTGTTGATGCTCAATTGGAGCTCAAAA AGAAGTCTTTCAGCCGCGATAAATTTGCTTCCAGTTCAGGTTTGTTCAATGAAATCTTGGAAGTTGTTTATCTTTTCTTGATCTGGGGTTCGCTGATATT GAGTTTTCTCATCTTGGGTTGTTGCTAA
AA sequence Show only first row Show all	>Potri.008G071300.3 pacid=42806542 polypeptide=Potri.008G071300.3.p locus=Potri.008G071300 ID=Potri.008G071300.3.v4.1 annot-version=v4.1 MDPSPSAAITRPHHGGREDCWSDGATGTLVEAWGDRYINLNRGNLRQKDWKEVADAVNNRQNGVKPRKTDIQCKNRIDTLKKKYKIEKSKPPPSTWPFYY RLDSLLGTNSNATNTFKKPTSVTFTVKSKTKPQNDVYPGLASCGESSSDDDDMAWFDERVKKKRHRMEDVDLSDGAACRELARAILKFGEIYERIESSKQ QQMIELEKQRMEFTKEVEFERMNLFVDAQLELKKKSFSRDKFASSSGLFNEILEVVYLFLIWGSLILSFLILGCC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.008G071300 [exp]	0	1
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133420 [exp]	1.00	0.8588
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	4.89	0.8491
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.007G090600 [exp]	5.83	0.8120
AT1G80290			Nucleotide-diphospho-sugar tra...		Potri.006G278400 [exp]	6.00	0.8112
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283200 [exp]	6.16	0.8509
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.002G221500 [exp]	6.70	0.8268
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G262866 [exp]	6.70	0.8412
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	7.34	0.8392
AT5G43960			Nuclear transport factor 2 (NT...		Potri.014G192900 [exp]	8.66	0.8498
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	8.83	0.8200

Compare expression of checked genes

Potri.008G071300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.