Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11090 174 / 2e-56 AS2 LBD21 LOB domain-containing protein 21 (.1) AT3G27650 145 / 5e-45 AS2 LBD25 LOB domain-containing protein 25 (.1) AT5G63090 142 / 2e-43 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G30130 137 / 3e-41 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT5G66870 139 / 5e-41 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT2G23660 135 / 3e-39 AS2 LBD10 LOB domain-containing protein 10 (.1.2) AT1G31320 128 / 3e-38 AS2 LBD4 LOB domain-containing protein 4 (.1) AT1G65620 129 / 4e-38 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT1G07900 125 / 1e-36 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G30340 126 / 2e-36 AS2 LBD13 LOB domain-containing protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G186000 [exp] 292 / 4e-103 AT3G11090 178 / 7e-58 LOB domain-containing protein 21 (.1) Potri.001G345700 [exp] 148 / 3e-46 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.012G083500 [exp] 142 / 2e-43 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G082200 [exp] 142 / 2e-43 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.005G134900 [exp] 143 / 1e-42 AT5G66870 254 / 8e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.007G039500 [exp] 142 / 4e-42 AT5G66870 256 / 1e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.005G097800 [exp] 136 / 1e-41 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 136 / 2e-41 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.009G076900 [exp] 136 / 2e-41 AT2G30130 228 / 2e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028986 [exp] 213 / 1e-71 AT3G11090 185 / 6e-61 LOB domain-containing protein 21 (.1) Lus10022264 [exp] 145 / 1e-44 AT5G63090 223 / 9e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10016769 [exp] 144 / 7e-43 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10022463 [exp] 143 / 8e-43 AT5G66870 221 / 8e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10027676 [exp] 139 / 3e-42 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10039940 [exp] 139 / 4e-42 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10005313 [exp] 140 / 5e-42 AT5G66870 209 / 4e-67 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10031285 [exp] 137 / 1e-41 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031855 [exp] 135 / 7e-41 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10040638 [exp] 134 / 2e-40 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.008G071500.1 pacid=42806667 polypeptide=Potri.008G071500.1.p locus=Potri.008G071500 ID=Potri.008G071500.1.v4.1 annot-version=v4.1 ATGAGAAATCAGGAGCCTCGTGCAAGCTCTTCATGTGCAGCTTGTAAGTTCTTGAAAAGAAGATGCACTCCCAATTGCATATTTGCTCCATATTTTCGCT CAGATGAACCTAAAAAGTTTGCCAGAGTACACAAGGTTTTTGGTGCAAGCAATGTGAGCAAGATACTGATTGAAGTGCCCGAAGAGCAACGTGAAGACAC GGTGAATTCTCTAGCTTATGAGGCTGAGGCAAGGCTTACAGACCCTGTCTACGGTTGCATTGGTGCTATCGCTCTGTTGCAAAGAAAAATGGTTGAGCTA CAAGTTGATCTTGCCATTGCTAGAGCTCGTCTAGCTCGGTATGCTGCCAATTCTCCTCCTATCTTGAATGATCATGGTAGCATGATACCAACCTTGGCTG AATTCCCTGCTTGTGGTGGATTGGTTGACAGTTTTAACCAGAGTTCATCCGATACCATGAATGATTTCAGCCAATTCCCATTTATATCTTAA
AA sequence Show only first row Show all	>Potri.008G071500.1 pacid=42806667 polypeptide=Potri.008G071500.1.p locus=Potri.008G071500 ID=Potri.008G071500.1.v4.1 annot-version=v4.1 MRNQEPRASSSCAACKFLKRRCTPNCIFAPYFRSDEPKKFARVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLTDPVYGCIGAIALLQRKMVEL QVDLAIARARLARYAANSPPILNDHGSMIPTLAEFPACGGLVDSFNQSSSDTMNDFSQFPFIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Potri.008G071500 [exp]	0	1
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	3.46	0.8326	CLC.3
AT1G68300			Adenine nucleotide alpha hydro...		Potri.013G112300 [exp]	3.46	0.8003
AT3G48970			Heavy metal transport/detoxifi...		Potri.015G144300 [exp]	5.65	0.8054
AT1G70780			unknown protein		Potri.017G125300 [exp]	10.44	0.6695
AT5G43830			Aluminium induced protein with...		Potri.008G158400 [exp]	11.83	0.7893
AT4G37540	AS2	LBD39	LOB domain-containing protein ...		Potri.014G017400 [exp]	16.00	0.7915
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	17.60	0.7311
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	18.00	0.7839
AT3G22480		PDF2	prefoldin 2 (.1.2)		Potri.001G240200 [exp]	18.13	0.7812
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.015G081102 [exp]	18.97	0.7410

Compare expression of checked genes

Potri.008G071500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.