Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46510 344 / 5e-109 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G29340 322 / 1e-99 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G54850 291 / 3e-89 ATPUB14 plant U-box 14 (.1) AT5G01830 288 / 2e-87 ARM repeat superfamily protein (.1) AT1G23030 272 / 4e-82 PUB11 ARM repeat superfamily protein (.1) AT2G28830 270 / 1e-78 AtPUB12 PLANT U-BOX 12 (.1) AT1G71020 255 / 4e-77 ARM repeat superfamily protein (.1.2) AT5G42340 258 / 1e-76 PUB15 Plant U-Box 15 (.1) AT1G60190 216 / 7e-61 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT2G23140 202 / 4e-55 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185900 [exp] 1077 / 0 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.011G071400 [exp] 343 / 8e-108 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.009G029600 [exp] 337 / 4e-106 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 335 / 6e-106 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.004G061800 [exp] 335 / 7e-105 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.001G238500 [exp] 332 / 2e-104 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.016G134000 [exp] 305 / 1e-93 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.006G107600 [exp] 300 / 4e-92 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.010G226500 [exp] 299 / 5e-92 AT3G54850 806 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007511 [exp] 885 / 0 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 858 / 0 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007317 [exp] 348 / 8e-110 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10040834 [exp] 330 / 2e-103 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 324 / 4e-101 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10006090 [exp] 324 / 7e-101 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 320 / 1e-99 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10037970 [exp] 318 / 1e-99 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 281 / 6e-85 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 280 / 2e-80 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.008G071600.1 pacid=42806126 polypeptide=Potri.008G071600.1.p locus=Potri.008G071600 ID=Potri.008G071600.1.v4.1 annot-version=v4.1 ATGGATGTAGTTCTTCCTCCTATCATGATCTCCTCAGGTTTAATGCCAACTGGGTCTTTGATGAAATCGTTGATTCATATATCCAATGAAGTTGCATCAG TGGAAAAGCTTCCTTTTTCACAGTTTAGGAACATTTCAACCATGATAAGGAGGATCAAGTTTCTTTCTTTTTTGTTTGAAGATATAAGGGAAACAAATAG CCCACTTCCTCCATCTTCCCTCCTGTGTCTCACCGAGCTCTTTTCTGTGATCCAAAGAGTCAAGCTTTTGATTCAACGGTGCAAGGGTGGTAGCTCTCTT TGGGGTCTTATACAGACAGAGTTTTTATCTAATCAATTCCATGCGCTAGTGAAGGAGATGGGCGGGGCACTTGATATTCTTCCTTTAAACTTGCTTAATT TAAGCACCGACACAAGAGAGCAAGTTGAACTTCTTCACAAGCAAGCAAAGAGGGTTGATTTGCTTGTTGACCCTCAAGAACTTCAAAGAAGAGAGGAGCT TCTACAAATAATGGCCAGCAATAATCAGAAGAACAGCAGGAACAAGGGATTCGTTGATTTTGTCAAAGTGAAAGAAGTTTTCAGCTGCATTGGTTTGAGA AGTCCATTGGATTATGAAGAAGAAATTTCGAAGCTTGAGGCAGAAGCGGAGAAGCAGGCTGGCACGGGAGGACTGATTGTGGTTTCCAATATAAACAATC TCATCTCTCTGGTAACATATTCCAAGTCCGTGATTTTTATTGACAGACATAAAGAGGAGATCAAAGAAAACTTCAAGCAGCTGTCTGCGTCCATGAATAG AAATCAGGATGTTTCTTCATCTTCTCAGTCAATACTTCCAAATATACCAGATGAATTCCGGTGCCCTATTTCCCTTGATTTGATGAAAGACCCTGTGATA GTTGCATCTGGGCACACTTACGATCGCAATTCAATTGCTCAGTGGATCAACTCAGGGCATCATACGTGTCCTAAGAGTGGGAAAAGACTGATTCACACTT CCCTGATACCTAATTATGCACTGAAGAGTCTGGTGCATCAGTGGTGCCAAGATAACAATGTCCCATTAATAGAGAATTCAACTTCTTCTTCCTCAAAATT TGAGAGAAGCAGCAGCAAGAGCAAATTAAGTGAGAAAGCTATTGAACACATTTCTGCTACAAAAGCTGCCATGGATGCAGTGAAAATGACAGCTGAATTT TTGGTCGGTAAGCTAGCAATGGGATCCCCAGAAATTCAACGGCAGGCGGCTTATGAGCTAAGATTATTAGCAAAGACTGGAATGGATAACCGCAAGATAA TTGCTGAGGCAGGAGCCATACCCTTTCTGGTGACATTACTGAGTTCCACTGATCCAAGAATTCAAGAAAATGCAGTCACTGCCTTGCTTAACCTTTCCAT ATTTGACAACAACAAGATATTAATTATGGCTGCTGGTTCAATTGACAGCATAATAAATGTTCTTGAATCAGGGAAAACTATGGAGGCAAGAGAAAATGCA GCAGCAACAATCTTTAGCCTGTCGATCATAAGCGATTGTAAGGTGACTATAGGAACCCGTCCTAGAGCATTCTCCGCCTTGGTTGGGCTTCTGAGAGAAG GCACAGCCACTGGAAAAAAGGATGCTGCAAGTGCACTATTCAATCTGTCAGTCTATAATGCTAACAAGGCAAGTGTTGTTGTTGCTGGGGCAGTTCCTTT GCTCATTGAATTATTGATGGATGACAAGGCAGGCATAACAGATGATGCCTTGGCATTGCTGGCTCTGCTTTCGGGTTGCTCTGAAGGGCTGGAGGAGATA AGACAGAGCAGAATTCTTATGCCTATGGTTATAGATCTCTTGAGATTTGGATCCACCAAAGGGAAGGAGAACTCGATAACTCTGTTGCTGGGGCTGTGCA AAGATGGAGGAGAGGAGGTTGCAAGGCGTCTGTTAATAAATCCGAGAAGTATTCCTTCCCTTCAAAGCTTGTCCACAGATGGTTCTCTAAAAGCCAGAAG AAAAGCTGATGCATTGCTCAGATTACTGAATAGGTGCTGCTCCCAATCCCACAATCCTGTTGGATAA
AA sequence Show only first row Show all	>Potri.008G071600.1 pacid=42806126 polypeptide=Potri.008G071600.1.p locus=Potri.008G071600 ID=Potri.008G071600.1.v4.1 annot-version=v4.1 MDVVLPPIMISSGLMPTGSLMKSLIHISNEVASVEKLPFSQFRNISTMIRRIKFLSFLFEDIRETNSPLPPSSLLCLTELFSVIQRVKLLIQRCKGGSSL WGLIQTEFLSNQFHALVKEMGGALDILPLNLLNLSTDTREQVELLHKQAKRVDLLVDPQELQRREELLQIMASNNQKNSRNKGFVDFVKVKEVFSCIGLR SPLDYEEEISKLEAEAEKQAGTGGLIVVSNINNLISLVTYSKSVIFIDRHKEEIKENFKQLSASMNRNQDVSSSSQSILPNIPDEFRCPISLDLMKDPVI VASGHTYDRNSIAQWINSGHHTCPKSGKRLIHTSLIPNYALKSLVHQWCQDNNVPLIENSTSSSSKFERSSSKSKLSEKAIEHISATKAAMDAVKMTAEF LVGKLAMGSPEIQRQAAYELRLLAKTGMDNRKIIAEAGAIPFLVTLLSSTDPRIQENAVTALLNLSIFDNNKILIMAAGSIDSIINVLESGKTMEARENA AATIFSLSIISDCKVTIGTRPRAFSALVGLLREGTATGKKDAASALFNLSVYNANKASVVVAGAVPLLIELLMDDKAGITDDALALLALLSGCSEGLEEI RQSRILMPMVIDLLRFGSTKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLSTDGSLKARRKADALLRLLNRCCSQSHNPVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.008G071600 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G185900 [exp]	3.46	0.9717
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	3.74	0.9747
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.005G080900 [exp]	4.47	0.9622
AT4G22030			F-box family protein with a do...		Potri.004G009000 [exp]	4.69	0.9514
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001300 [exp]	5.29	0.9615
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	8.83	0.9617
AT4G22030			F-box family protein with a do...		Potri.004G009300 [exp]	14.07	0.9432
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001401 [exp]	14.69	0.9551
AT1G01490			Heavy metal transport/detoxifi...		Potri.003G132200 [exp]	14.96	0.9352
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	15.49	0.9545

Compare expression of checked genes

Potri.008G071600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.