Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05520 626 / 0 Outer membrane OMP85 family protein (.1) AT3G11070 605 / 0 Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185600 [exp] 853 / 0 AT5G05520 651 / 0.0 Outer membrane OMP85 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009835 [exp] 622 / 0 AT5G05520 625 / 0.0 Outer membrane OMP85 family protein (.1) Lus10040946 [exp] 618 / 0 AT5G05520 627 / 0.0 Outer membrane OMP85 family protein (.1) Lus10007514 [exp] 607 / 0 AT5G05520 600 / 0.0 Outer membrane OMP85 family protein (.1) Lus10017441 [exp] 597 / 0 AT5G05520 597 / 0.0 Outer membrane OMP85 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [poplar] [flax] MBB PF01103 [poplar] [flax] Omp85 Omp85 superfamily domain CL0191 [poplar] [flax] POTRA PF07244 [poplar] [flax] POTRA Surface antigen variable number repeat
Representative CDS sequence Show only first row Show all	>Potri.008G071800.1 pacid=42806279 polypeptide=Potri.008G071800.1.p locus=Potri.008G071800 ID=Potri.008G071800.1.v4.1 annot-version=v4.1 ATGGCAGAACCAGAATCCGACATTTCCGACCCGGTCGTACAAAACCCTAACAATGAAGACGAAGAAGACCTCTACGAACAAAGCGACGACGTCGAGGACG AGGACGAGGACGAGGACGAGGACCTCGAATCCCAAAAGGCGAAGCTCCGAAACCGATTTCAGAATTTCTTTCGCAGAATACAACACGAATCGGTCCCAAT TCGTGTTCATGATGTTGTAATAAAAGGAAACACGAAAACTAAAGACACTTTGATTGAAGCAGAAACGGCGTCGCTTAAAGATGCGTCTACCTTTAAAGAG TTGTTTGCGGCTTCAAGCGATGTGAATTTTAGGTTACAAGCACTTGAGATTTTTGATTCGGTGAAGATCACGATTGATTCGGGCCCGCCGGAGTTGCCTG GGACTGCTAACGTGATTGTCGATGTTGTGGAAACTAAGAGCCCTCTCTTGGGTGAAATTGGGGTTTTCAACAAAGGCGAGGCTTCATCATCAACATTGGA GGGTACACTCAAGTACAAAAACATATTTGGTTATGGGGATCTTTGGGATGGCTCTCTGGCATATGATTGTGACCACAAGGCAGAGGTAAGTGCTGGTGTG TTTTTGCCAAGATTCAAAGGACTTGTGAACCCGGTAACAGCGCGACTATTCCTGCAATCTCAAGACTGCCTAAAGTTTTCCTCTTTCAAAGAGCGATCAC TAGGGCTATCTCTTGGCTTATTCTCAACCAGGAACCATGATGTGGTGTACAATCTTGCCTGGCGTACATTGACAGATCCATCACGAACAGCTTCGAGTTC AGTAAGGGGGCAGCTTGGTCATGGTTTACTTTCATCTTTGAAGTACACATTTAAGATTGACAGGAGAAATTCACCTCTGAGGCCAACACGTGGATTTGCT TTTGTTTCTACAACCCAAATTGGTGGCCTTGCACCTGATAGTCGCAGCTTACGATTTTTGCGCCAGGAGCTTGATCTTCGTTGTGCTATACCTCTTGGAT TTTACCATTCTGCACTGAACCTGGGAATATCTGCTGGTGTTGTTTTTCCCTGGGGATCTGGATTTTCAAGCATGCCTTCACCACTGCCAGAAAGGTTCTT CCTTGGTGGCAACTTATCTCCAGTTTGCACTTTGGGTGGTCCAACATCATTATGGGGGTTTAGGACTAAAGGTCTTGGCCCTACTGAGCCTCGAAGACAA TTGCAAAATAACCCAGCTGATGAGAATGCTGATTCTGGAAGGGATTATCTTGGAGGAGATCTTGCTGTTGCTGCTTTTGCAGATTTTTCTTTTGATTTTC CATCGAAGTGGTTAAGTGCAAAAGGAATCCATGGACACCTTTTTGCTTCTGCTGGGAATGTCGACAAACTAACAGAAAATTCATATCGGAATTTTTCTTT GCAAAAGTTCACTCAATCATTCCGTAGCTCCGTAGGAGTTGGAGTTGTTATTCCTACAAATCTCTTCCGAATGGAGCTGAATTATTGCAACATCTTGAAG AAATTTGGCGAGGACCGTGGCAAGTCAGGATTCCGTGTCAGCTTTTCTTCTCCATCATAG
AA sequence Show only first row Show all	>Potri.008G071800.1 pacid=42806279 polypeptide=Potri.008G071800.1.p locus=Potri.008G071800 ID=Potri.008G071800.1.v4.1 annot-version=v4.1 MAEPESDISDPVVQNPNNEDEEDLYEQSDDVEDEDEDEDEDLESQKAKLRNRFQNFFRRIQHESVPIRVHDVVIKGNTKTKDTLIEAETASLKDASTFKE LFAASSDVNFRLQALEIFDSVKITIDSGPPELPGTANVIVDVVETKSPLLGEIGVFNKGEASSSTLEGTLKYKNIFGYGDLWDGSLAYDCDHKAEVSAGV FLPRFKGLVNPVTARLFLQSQDCLKFSSFKERSLGLSLGLFSTRNHDVVYNLAWRTLTDPSRTASSSVRGQLGHGLLSSLKYTFKIDRRNSPLRPTRGFA FVSTTQIGGLAPDSRSLRFLRQELDLRCAIPLGFYHSALNLGISAGVVFPWGSGFSSMPSPLPERFFLGGNLSPVCTLGGPTSLWGFRTKGLGPTEPRRQ LQNNPADENADSGRDYLGGDLAVAAFADFSFDFPSKWLSAKGIHGHLFASAGNVDKLTENSYRNFSLQKFTQSFRSSVGVGVVIPTNLFRMELNYCNILK KFGEDRGKSGFRVSFSSPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05520			Outer membrane OMP85 family pr...		Potri.008G071800 [exp]	0	1
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Potri.011G166800 [exp]	7.54	0.7539
AT4G29870			Oligosaccharyltransferase comp...		Potri.018G139600 [exp]	11.44	0.8161
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.015G042600 [exp]	14.73	0.7657
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Potri.001G246500 [exp]	17.66	0.7727
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G051500 [exp]	18.73	0.7853
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.005G226100 [exp]	55.18	0.7151
AT1G48430			Dihydroxyacetone kinase (.1)		Potri.012G041100 [exp]	58.32	0.6888
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.003G180000 [exp]	71.02	0.7328
AT5G42150			Glutathione S-transferase fami...		Potri.015G038300 [exp]	71.76	0.7500
AT1G14060			GCK domain-containing protein ...		Potri.019G081400 [exp]	73.04	0.7352

Compare expression of checked genes

Potri.008G071800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.