Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40270 449 / 9e-153 Protein kinase family protein (.1.2) AT3G56050 437 / 1e-147 Protein kinase family protein (.1.2) AT4G18640 400 / 6e-131 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 387 / 5e-126 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58540 371 / 4e-124 Protein kinase superfamily protein (.1.2.3) AT5G07150 342 / 4e-110 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 231 / 9e-67 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 210 / 2e-59 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G78980 148 / 2e-37 SRF5 STRUBBELIG-receptor family 5 (.1) AT2G20300 147 / 8e-37 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185300 [exp] 634 / 0 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 515 / 2e-175 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 509 / 8e-173 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.004G058100 [exp] 416 / 1e-136 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.011G067400 [exp] 412 / 3e-135 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G106600 [exp] 245 / 5e-72 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G124800 [exp] 240 / 4e-70 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G025700 [exp] 144 / 2e-37 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.008G181200 [exp] 148 / 4e-37 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007516 [exp] 503 / 3e-171 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 500 / 7e-170 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 483 / 2e-163 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 474 / 7e-160 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 372 / 3e-123 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 358 / 4e-115 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 355 / 8e-114 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 353 / 7e-112 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 237 / 7e-69 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 234 / 9e-68 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G072100.1 pacid=42806608 polypeptide=Potri.008G072101.1.p locus=Potri.008G072100 ID=Potri.008G072100.1.v4.1 annot-version=v4.1 ATGGAGATCAATAACTGGAAAATCAGTCGGTTTGGAGTTCTAATCTTGTTTTTGGTATATCAAAACTTGATTCTCTGCTTTTCGCTTAATGATGAAGGTA TGGCGTTGTTGAAGTTGAGAGAGGGAATTGTGAGTGATCCATACGGTGCGTTGAAGAGCTGGAAAATGGATTTTGGAGTGATTAATCCCTGTTCCTGGTT CGGTGTTGAGTGCTCTTATGATGGCAAAGTTGTAGTTTTGAACTTGAAAGATCTTTGTCTTGAAGGAACACTGGCACCTGAAATCGCAAACCTTGTCCAC ATAAAGTCTATTATTTTACGCAACAACTCATTTTCGGGGATCATCCCCGAAGGGGTTGGAGAGCTGAAGGAGTTGGAAGTGCTAGATTTTGGGTACAATA ACTTCAGTGGGCCCCTTCCACCTGATCTTGGCAGTAATCCCTCCCTGGCAATCCTTCTGCTGGACAACAATGAGCGACTCAGAAGCTTATCATCTGAAAT TCAACATCTGGAGACGCTTTCTGAATTTCAAGTAGACGAGAACGAGTTATCTAATGCAGCTAAAGGTTCATCCCGCAACAAAAGATCCATTACATGGAAT CTTGTGCGTATAGAAAATGCAGTTCACAGACGACAGCTGAAAAATAATAAAAATAACAAAGATGTGACTTCTCCTCGTCCTTCTAGGACATCCCCCTCAC CATCTCCAAAAGAGTCAACTGCACCATCTACAAGTGATCCATCTGCACCACCTTCCATTTCAGCTCCAGCTCGATCTGACTCAAGTGCTCCCAGAATATC ATCTGAATCTTTCCAATCTAAAAAAAGTGCAATCATAGCTGGAGCTATAGGGGGCACCCTAGTTATTCTCATTTCAATCCTCAGTATATATATCTGCAAA ACCAACAAGGCTTCTGTCAAACCTTGGGCCACAGGATTGAGTGGACAGCTTCAGAAAGCATTTGTAACTGGTGTGCCAAAGCTTAAGAGATCTGAGCTTG AAGCGGGCTGTGAAGATTTTAGTAATGTAATCGGTTCTTCACCAATTGGCACACTATACAAAGGGACGTTATCTAGTGGAGTTGAAATAGCTGTGCTAGC TGTGGCATCTGTTGCAATAACATCTGCCAAGGATTGGTCGAAGAATCTAGAAGTTCAGTTTAGACAGAAGATCGAGACATTATCAAAAGTGAACCACAAG AATTTTGTTAACCTTATTGGGTACTGTGAGGAGGAGGAGCCTTTCACAAGAATGATGGTATTTGAATATGCGCCGAATGGGACACTCTTCGAGCATTTAC ACATTAAAGAATCTGAACACTTGGACTGGGGGATGCGGCTGAGAATCGCAATGGGCATGGCTTACTGCCTTGAGCATATGCACCAGCTGAATCCACCAAT AGCTCACAGCAACCTGACCTCTTCGGTGATCTCTCTAACTGAGGACTATGCATCCAAAATCTCAGACTTCACCTTCTCAAATGACATAATTGCAAATGAG ATGGAACTATCTGGCAAGAAGCTCCCAGATGTGCCTTTGGCACTCCCAGAAAGTAATGTTTACAATTTTGGTGTCTTGTTATTTGAAATGGTTACTGGTA GGCTACCATACTCGGTGGACAATGTCTCACTTGAAGACTGGGCATCAGACTATTTGAGAGGGTACCAACCCCTCAGGGAAAAGGTGGATCCAACTCTGGA CTCGTTCGAAGAGGAAAAGCTGGAGAGAATTGGTGAAGTAATAAAATCTTGTGTGCACCCGGATCCAAAACAAAGACCAACAATGAGAGAAGTTACTGGA GGGTTAAGAGAGATAACTACATTAACACCAGATGCAGCAATCCCAAAACTTTCTCCTCTGTGGTGGGCAGAGCTTGAAATTTTGTCCACAGAAGCCAGCT AA
AA sequence Show only first row Show all	>Potri.008G072100.1 pacid=42806608 polypeptide=Potri.008G072101.1.p locus=Potri.008G072100 ID=Potri.008G072100.1.v4.1 annot-version=v4.1 MEINNWKISRFGVLILFLVYQNLILCFSLNDEGMALLKLREGIVSDPYGALKSWKMDFGVINPCSWFGVECSYDGKVVVLNLKDLCLEGTLAPEIANLVH IKSIILRNNSFSGIIPEGVGELKELEVLDFGYNNFSGPLPPDLGSNPSLAILLLDNNERLRSLSSEIQHLETLSEFQVDENELSNAAKGSSRNKRSITWN LVRIENAVHRRQLKNNKNNKDVTSPRPSRTSPSPSPKESTAPSTSDPSAPPSISAPARSDSSAPRISSESFQSKKSAIIAGAIGGTLVILISILSIYICK TNKASVKPWATGLSGQLQKAFVTGVPKLKRSELEAGCEDFSNVIGSSPIGTLYKGTLSSGVEIAVLAVASVAITSAKDWSKNLEVQFRQKIETLSKVNHK NFVNLIGYCEEEEPFTRMMVFEYAPNGTLFEHLHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHSNLTSSVISLTEDYASKISDFTFSNDIIANE MELSGKKLPDVPLALPESNVYNFGVLLFEMVTGRLPYSVDNVSLEDWASDYLRGYQPLREKVDPTLDSFEEEKLERIGEVIKSCVHPDPKQRPTMREVTG GLREITTLTPDAAIPKLSPLWWAELEILSTEAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40270			Protein kinase family protein ...		Potri.008G072100 [exp]	0	1
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G148000 [exp]	4.24	0.7368
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Potri.003G121900 [exp]	7.48	0.7511
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.019G033800 [exp]	10.58	0.6921
AT2G46080			unknown protein		Potri.002G162600 [exp]	10.67	0.7577
AT4G12010			Disease resistance protein (TI...		Potri.017G105201 [exp]	10.95	0.7662
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.001G241600 [exp]	16.73	0.6990
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.005G172200 [exp]	16.73	0.7447	MEKK1.1
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Potri.013G156700 [exp]	16.97	0.6704
AT5G42050			DCD (Development and Cell Deat...		Potri.001G088800 [exp]	17.32	0.7309
AT2G11890			adenylate cyclases (.1.2)		Potri.006G062000 [exp]	18.97	0.6742

Compare expression of checked genes

Potri.008G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.