Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58530 177 / 9e-55 Glutaredoxin family protein (.1) AT5G13810 152 / 2e-45 Glutaredoxin family protein (.1) AT2G41330 147 / 7e-42 Glutaredoxin family protein (.1) AT3G57070 142 / 4e-40 Glutaredoxin family protein (.1) AT5G39865 142 / 4e-40 Glutaredoxin family protein (.1) AT3G28850 138 / 2e-38 Glutaredoxin family protein (.1) AT5G06470 121 / 1e-33 Glutaredoxin family protein (.1) AT3G11773 117 / 4e-33 Thioredoxin superfamily protein (.1.2) AT5G01420 116 / 3e-30 Glutaredoxin family protein (.1) AT5G03870 115 / 4e-30 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075600 [exp] 211 / 2e-68 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 202 / 4e-65 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 157 / 4e-47 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 159 / 1e-46 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 156 / 2e-45 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.T125406 [exp] 152 / 2e-45 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 152 / 2e-45 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 139 / 1e-38 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 134 / 5e-38 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040949 [exp] 233 / 1e-77 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10007517 [exp] 232 / 7e-77 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10017438 [exp] 195 / 9e-63 AT5G58530 132 / 1e-37 Glutaredoxin family protein (.1) Lus10009838 [exp] 180 / 1e-52 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039537 [exp] 144 / 9e-42 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 143 / 2e-41 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10017029 [exp] 144 / 1e-40 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10021353 [exp] 143 / 4e-40 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10017335 [exp] 140 / 8e-40 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10001669 [exp] 138 / 4e-39 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Potri.008G072200.1 pacid=42808568 polypeptide=Potri.008G072200.1.p locus=Potri.008G072200 ID=Potri.008G072200.1.v4.1 annot-version=v4.1 ATGTGGCCCAACTGGTTAAGATCGCCCTCAAGATTTCCCCCCTCCCCGAGATCACAACCTCCGTCACCAAGATTCTGTTGCTCTTCCTTCAAGGATATCC AAACCCTCGTCACTGAAGAACCCGAACCCATTTCCCCCAAATCGCCCTCCCTTTTCCACCGGGCCCGGATCTCCACTTCAGTCCTCCGTTCATGGGCCCA CCGCCATGCACACCCATCGACCAATCAATCTATTTCACTGCCAACCCACCTGGACCAACACATCATTCTATACTTTACTAGTCTCCGCATTGTCCGCAGA ACCTTTGAGGATTGCAGGACCGTCAGATCCATCCTCCGTGGGTTTCGTGTCCAGATAGACGAACGTGATTTATCGATGGACGGTATGTATTTAGACGAGT TACAAGAGATTATTGGGTCAAAAAAAGTTACTTTACCAATTGTTTTCATCGGAGGAAAATATATTGGCGGGGTCAAGGAAATCACTGAATTACACGAGAG TGGAGATTTGAAGAAGCTGATTGGCGGGTTACCGCTTTCTGTCACCAATGCCTGTGATACATGCGGAGGGCTCAGTTTTGTTCTCTGCGAACAGTGTAGT GGGAGCCACAAGATCTACACCGCCAAGTATGGGTTCAAAAACTGCACTGCTTGCAATGTTAACGGTCTGATTAGATGCCCCACTTGTGTTCCTTCGCTAC GTAGGCGCAGGTCATCATCATCTTAG
AA sequence Show only first row Show all	>Potri.008G072200.1 pacid=42808568 polypeptide=Potri.008G072200.1.p locus=Potri.008G072200 ID=Potri.008G072200.1.v4.1 annot-version=v4.1 MWPNWLRSPSRFPPSPRSQPPSPRFCCSSFKDIQTLVTEEPEPISPKSPSLFHRARISTSVLRSWAHRHAHPSTNQSISLPTHLDQHIILYFTSLRIVRR TFEDCRTVRSILRGFRVQIDERDLSMDGMYLDELQEIIGSKKVTLPIVFIGGKYIGGVKEITELHESGDLKKLIGGLPLSVTNACDTCGGLSFVLCEQCS GSHKIYTAKYGFKNCTACNVNGLIRCPTCVPSLRRRRSSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58530			Glutaredoxin family protein (....		Potri.008G072200 [exp]	0	1
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Potri.007G058200 [exp]	4.00	0.7106
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.002G040100 [exp]	8.36	0.6631
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.003G008400 [exp]	13.78	0.6520
AT3G26935			DHHC-type zinc finger family p...		Potri.015G101900 [exp]	16.43	0.6385
AT3G04620		DAN1	D NUCLDUO1-ACTIVATEEIC ACID BI...		Potri.005G056000 [exp]	18.73	0.6261
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.001G079900 [exp]	21.30	0.7068
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.014G087000 [exp]	25.09	0.6629
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	26.92	0.6262	RAB11.15
AT5G65650			Protein of unknown function (D...		Potri.007G027700 [exp]	27.23	0.5997
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Potri.010G185100 [exp]	27.34	0.6052

Compare expression of checked genes

Potri.008G072200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.