Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05490 429 / 6e-143 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) AT5G16270 58 / 2e-08 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT3G59550 50 / 3e-06 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G078500 [exp] 61 / 3e-09 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.010G178600 [exp] 60 / 4e-09 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.001G225600 [exp] 54 / 4e-07 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014204 [exp] 410 / 3e-135 AT5G05490 314 / 3e-98 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) Lus10022665 [exp] 147 / 8e-37 AT2G30110 748 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10022711 [exp] 120 / 2e-28 AT5G05490 103 / 3e-23 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) Lus10026862 [exp] 64 / 4e-10 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020233 [exp] 62 / 8e-10 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020235 [exp] 59 / 2e-08 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10037478 [exp] 48 / 2e-05 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0157 [poplar] [flax] Kleisin PF04824 [poplar] [flax] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein CL0157 [poplar] [flax] PF04825 [poplar] [flax] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Potri.008G072300.2 pacid=42807478 polypeptide=Potri.008G072300.2.p locus=Potri.008G072300 ID=Potri.008G072300.2.v4.1 annot-version=v4.1 ATGCGAAGATCAACCGAAAGAAGCTCAATAAGCTCAACATCATCCGTATCTGGTTATTTTACTTTTAAACTATCTCTATTTTCCTTTCCTTTTTCCAAAT CCGCTCAAATCGATATGGCGGACTTCATTTTTCTTCTCATTTTTGCTTGTTTCTACAGTGAAGAGATTTTGAATCCCTCAGTGCCTATGGCTCTTAGACT CTCTGGAATTCTCATGGGTGGAGTTGTTATTGTCTATGAACGAAAAGTGAAGCTCCTCTATGATGATGTAACCCGCCTGCTGGTTGAAATAAACGAAGCA TGGAAAGTGAAGGTAGCCCCAGACCCCACTGTCCTTCCTAAGGGAAAATCACAGGCCAGGAAAGAGGCAGTGACTTTACCAGAGAACCAAGAAACAGATG TGGGAGAAATTGAGCAATCCCTTAATTACTCCAATGCTGCAACCACCACCATGGGTTTTCAACAAACAGCCTATTTCACCATGCGGCTTGACAATGTGGA TGAACCGTTTGTTAACAATGATACCAGGGAGGGAGATGCATCCCATCACTTACATCAAGCTGATGCCGACAACATCACGTTATTTGAACGTTTTGATTCA TACCAGGCTGATGCTGATGCGTACAATCGCTTTGAAAGATTTGATATTGAAGGGGATGAAGAGACACAGGTGAACTTCACTTCAGCAGATCATATGGATA TCCCAACTACTCTCATACCCTCCCCACATGAACAAGACGAAGCTCAAAGAGCGGAAGAAAACCAAGACCATCATCCAGAATTCCAAGTCAATCAACAATC TAATGAATGCAAGGGAGCCAGGCAGGATCAGCAGAAGCGAAGGCCAATTAAAAGGAAAACAAGAAGACAAGCAACTACTACCGTTGATTATGAACAAACC ATTATTCCAGGTCATGTATACCAGTCATGGCTTCAAAATGCTTCTGACATTGTCTCAAGGAGAGGAAGAAAGAGGAAGGCACGCATGGGTATTATGTCCA CTACAAAAATATCTAACCTCATGGAGCTCCCACCTACTGTTCTTATTGATGATAATGGAAATAGAGAAATCTATTATCCAGCTCCTCTTCTGGAACTTTG GACCAAAAGTACCCAGCCTCCTCATGACTCCCCTTCTGAAAGGACTTCTGCACCACTGCCACCAGAACCATCAAAATCGTCACCACCAGACAGAGTAAAT TATGAAGAACCAGCTGGATATACCTTTGATGATGTTCATAGTGGAGTTGGCTCTCAGTCACTGGGTACTTCGATAGAGAAGATGAGAACAAACGTTGTGA ATGATGAGCAATCCATGGATATCCTCATGGAAGAACTAAAAGCCAACCTTAGGAACAATGGTGTGGGGATGACTGAAGCCAATATGGCAACACCTAGGAA TTCTGGAGATGGAGTGGGGTCCATTCCAAGCTCTGGATCAGGGCATGGCATTCCACCACATTATTTGGAAGTCAATTTAGGACGATCAAGTAAGAAAGGA CGTCATTCCTCATCCAGACACAGTGGTAGTAGTCTCGAGACAGTAGTTGAAGAGGATCCTTGGCGGTTTGCTGATCCAAATTTTGAGCTATCAAGGCTGT CTGAGAATGGCCCAACACCTGATCAAGAACTGTTGGTTGAAACTGAACCTACACAAACCCAACATCATGTTGTTGGTCAGCCTGTTGACAAGATAGCTGA TTCTATCCGAATGCAAATGAAAACGCATTTTGAAACGCCAGGAGCCCCTCAAGTAGAATCCCTGAACAACCTGGCTGCTGGAATGAACACAAAAGCAGCA GCTCTGCTGTTTTATCAAACTTGTGTTCTTGCGTCACGTGATTTCCTAAGAGTTGAACAAAAGGTGCCTTATGGGGATATTCTCATCTCTAAAGGAGCCA AGATGCATTAA
AA sequence Show only first row Show all	>Potri.008G072300.2 pacid=42807478 polypeptide=Potri.008G072300.2.p locus=Potri.008G072300 ID=Potri.008G072300.2.v4.1 annot-version=v4.1 MRRSTERSSISSTSSVSGYFTFKLSLFSFPFSKSAQIDMADFIFLLIFACFYSEEILNPSVPMALRLSGILMGGVVIVYERKVKLLYDDVTRLLVEINEA WKVKVAPDPTVLPKGKSQARKEAVTLPENQETDVGEIEQSLNYSNAATTTMGFQQTAYFTMRLDNVDEPFVNNDTREGDASHHLHQADADNITLFERFDS YQADADAYNRFERFDIEGDEETQVNFTSADHMDIPTTLIPSPHEQDEAQRAEENQDHHPEFQVNQQSNECKGARQDQQKRRPIKRKTRRQATTTVDYEQT IIPGHVYQSWLQNASDIVSRRGRKRKARMGIMSTTKISNLMELPPTVLIDDNGNREIYYPAPLLELWTKSTQPPHDSPSERTSAPLPPEPSKSSPPDRVN YEEPAGYTFDDVHSGVGSQSLGTSIEKMRTNVVNDEQSMDILMEELKANLRNNGVGMTEANMATPRNSGDGVGSIPSSGSGHGIPPHYLEVNLGRSSKKG RHSSSRHSGSSLETVVEEDPWRFADPNFELSRLSENGPTPDQELLVETEPTQTQHHVVGQPVDKIADSIRMQMKTHFETPGAPQVESLNNLAAGMNTKAA ALLFYQTCVLASRDFLRVEQKVPYGDILISKGAKMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Potri.008G072300 [exp]	0	1
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.015G053100 [exp]	7.48	0.7092	Pt-ARP4.1
AT4G20020			unknown protein		Potri.004G218650 [exp]	7.61	0.7602
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Potri.002G080100 [exp]	33.31	0.6070
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	36.74	0.6860
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015101 [exp]	42.72	0.6491
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.009G143500 [exp]	59.19	0.6724
AT1G01880			5'-3' exonuclease family prote...		Potri.002G152801 [exp]	59.32	0.6645
AT2G41080			Tetratricopeptide repeat (TPR)...		Potri.016G075000 [exp]	63.24	0.6660
AT5G36930			Disease resistance protein (TI...		Potri.006G269900 [exp]	74.77	0.6509
AT1G05950			unknown protein		Potri.007G127800 [exp]	75.29	0.6098

Compare expression of checked genes

Potri.008G072300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.