Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05480 577 / 0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) AT3G14920 350 / 3e-113 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185100 [exp] 945 / 0 AT5G05480 601 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.011G109700 [exp] 367 / 1e-118 AT3G14920 708 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017437 [exp] 658 / 0 AT5G05480 605 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10025775 [exp] 341 / 1e-109 AT3G14920 568 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10017926 [exp] 340 / 1e-108 AT3G14920 649 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10007518 [exp] 300 / 2e-98 AT5G05480 315 / 1e-104 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10025771 [exp] 245 / 7e-73 AT3G14920 396 / 1e-130 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10035890 [exp] 155 / 5e-41 AT3G14920 259 / 1e-79 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10007519 [exp] 116 / 2e-30 AT5G05480 81 / 9e-19 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12222 [poplar] [flax] PNGaseA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
Representative CDS sequence Show only first row Show all	>Potri.008G072400.1 pacid=42807555 polypeptide=Potri.008G072400.1.p locus=Potri.008G072400 ID=Potri.008G072400.1.v4.1 annot-version=v4.1 ATGCAACCATTCCCCGCTATGTTTCTTCTCCTTTTGCTCACAGTGTCCCTTCCACTGACACACTCCACTTCACCAGAACGCTTCTTCAAACCATCCTCAC CACCTCTGTCGTCATCGCACAAACCCAAACCAAAATCCAAAGAATACTTCGAGCTCACCCATCCTCTACCGTCCGATCGTTTGAAGCCATCATGCGAACT TCACATCATCCAGCATTCATTTGCCAACACAATGAACCAGCCTCCTTACTCCACCCCATACTTTCCACCATTCCAATGCCCCCCTCCTTGGTCCCACGTA GCCCTCGAATTCCACGTCAAATCCAAAGGTGATCAACACGACCGCATCTCCGCCTTATGGCTCGGTGGCTCCGAGCTCCTCCGCACCAGCACCGCCGAAC CCGGAAAACGCGGTATCTTCTGGAAGGTTCGAAAAGACATCACTAGATACTCCTCTCTCCTCCAACAAAACAACCTTAACTTTACTGTCATGCTCGAAAA CATCGTTGACGATATCTACACCGGCGTCTACCATGTTGACGTCACTCTCTATTTCTACACGGATAACGCCATCAAGGTTCCGTTCACGGGTATAACTCAA AATCTAATTGCTCCAGCTTTACAATTACCCTTCTTTGGAGACAAGAGCATGTATGACCCACCAGCTGATTTAATAATTCCGATTTCAGCCTCCGATAGCA CTAAGGGTTATTGGTTTATAGTAGAGGGAGATTTGGATGTTAAGTTTGAGAAGGTTAGGTTTCCGTTGAATACACGGAAGGTCGTTTTGGAATTATACGT TTCGTTTCATGGAACTGATGAGTTTTGGTATTCGAATCCGTCGAGTTCTTACATTAGAATGAATAACATGAGTAATCCGAGGGGTAATGGCGCGTTTAGG GAGGTTTTTGTTTCAATTGATGGGAAATTAGTAGGATCAGAAATGCCATTTCCGGTGATATTTACCGGAGGGATTAATCCTTTGTTTTGGAAACCTATCG TAGCAATTGGTGCTTTTAATTTACCTTCGTATGATTTTGATTTGACGCCGTTTTTGGGCATGGTTTTAGACGACGAAGATCATGTTTTTGGTGTTGGAGT TACGGATGGGATTGAGTACTGGCTTGTTGATGCGAATTTGCATATCTGGTTGGATTCATCCTCGACTATTGTGGAAGCGAAGAATGTTGTGAATGTTTAT CCTGCATCAGAAATAAGTCGTGGTGAAGAGTTTCAATCACTTGATGGATCGTTTGAGATTAAGGCGGAGAAGTTTACGCGAATAGAAGGGTGGGTTAAGT CGAGTTCAGGAAATTTAACTACCAGTATATTGCAGGAGGTTAAGTTTAGGAGCGCCATAAAGTTCAAAAGGAAGGGGACTTATAACACCGTTAAACAGAA TATCGAGGTGAGAAGAGAAGCGAGAGTGTTGAATGATGTGGGTGGATTGGTTAGTCGTGTTATTGTCAAGAGAAAGTATCCTCTCAAAGTGATTACTGTC ACTCTCCCTGGGTTGAAGAATGATACTTTCATGCTTGTTACTAATGTTACTCATGCAGTGAATGAGAGGATTAAAAACGGGAAGTTGTCAAGCCATGTTA TTAACAAACAGGTTTCCAATGGTTGGATGGAGGTTAGGGATCATTCTGTTCTTTCAGGTGAAGCGATGACGAATCAAACTTACGTTTGCAGGGACGAGCT AGGTTGCTATGTTAGGACTGTTGGAACATTGAATGGAAGACTCGTCAAAGACGATACTGCTTATGCCTGTCCATCACTTATGTAA
AA sequence Show only first row Show all	>Potri.008G072400.1 pacid=42807555 polypeptide=Potri.008G072400.1.p locus=Potri.008G072400 ID=Potri.008G072400.1.v4.1 annot-version=v4.1 MQPFPAMFLLLLLTVSLPLTHSTSPERFFKPSSPPLSSSHKPKPKSKEYFELTHPLPSDRLKPSCELHIIQHSFANTMNQPPYSTPYFPPFQCPPPWSHV ALEFHVKSKGDQHDRISALWLGGSELLRTSTAEPGKRGIFWKVRKDITRYSSLLQQNNLNFTVMLENIVDDIYTGVYHVDVTLYFYTDNAIKVPFTGITQ NLIAPALQLPFFGDKSMYDPPADLIIPISASDSTKGYWFIVEGDLDVKFEKVRFPLNTRKVVLELYVSFHGTDEFWYSNPSSSYIRMNNMSNPRGNGAFR EVFVSIDGKLVGSEMPFPVIFTGGINPLFWKPIVAIGAFNLPSYDFDLTPFLGMVLDDEDHVFGVGVTDGIEYWLVDANLHIWLDSSSTIVEAKNVVNVY PASEISRGEEFQSLDGSFEIKAEKFTRIEGWVKSSSGNLTTSILQEVKFRSAIKFKRKGTYNTVKQNIEVRREARVLNDVGGLVSRVIVKRKYPLKVITV TLPGLKNDTFMLVTNVTHAVNERIKNGKLSSHVINKQVSNGWMEVRDHSVLSGEAMTNQTYVCRDELGCYVRTVGTLNGRLVKDDTAYACPSLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Potri.008G072400 [exp]	0	1
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Potri.007G058200 [exp]	2.00	0.8163
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Potri.017G089900 [exp]	2.82	0.8348
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.005G117000 [exp]	5.91	0.8021
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Potri.007G015100 [exp]	6.24	0.8128
AT5G27730			Protein of unknown function (D...		Potri.005G025200 [exp]	8.71	0.8080
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.001G251200 [exp]	10.67	0.7935
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.010G127400 [exp]	12.40	0.7589
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.009G045800 [exp]	13.74	0.7735
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.009G157600 [exp]	14.73	0.7808
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.006G155200 [exp]	25.21	0.7568

Compare expression of checked genes

Potri.008G072400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.