Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ALPHA.7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40290 547 / 0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) AT5G05470 512 / 0 ATEIF2-A2, EIF2ALPHA ,EIF2 ALPHA eukaryotic translation initiation factor 2 alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184900 [exp] 599 / 0 AT2G40290 551 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017435 [exp] 548 / 0 AT2G40290 559 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) Lus10007521 [exp] 543 / 0 AT2G40290 558 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) Lus10024444 [exp] 221 / 1e-71 AT2G40290 211 / 1e-67 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain CL0021 [poplar] [flax] PF07541 [poplar] [flax] EIF_2_alpha Eukaryotic translation initiation factor 2 alpha subunit
Representative CDS sequence Show only first row Show all	>Potri.008G072500.1 pacid=42808004 polypeptide=Potri.008G072500.1.p locus=Potri.008G072500 ID=Potri.008G072500.1.v4.1 annot-version=v4.1 ATGGCGACGCACTCACCAAATCTGGAGTGTCGCATGTACGAAGCGCGATACCCAGAGGTTGATATGGCAGTTATGATTCAAGTGAAAAACATCGCCGACA TGGGCGCTTATGTTTCTTTACTCGAGTACAACAACATCGAGGGTATGATCTTGTTTTCGGAGCTGTCTCGCCGTCGGATTCGGAGTGTTAGTAGTTTGAT TAAGGTTGGCCGCATCGAGCCTGTCATGGTCTTACGTGTCGATAAAGAGAAAGGCTATATTGATTTGAGTAAGAGAAGAGTTAGTGAAGAGGATATTCAG ACTTGTGAAGAGAGGTATAATAAGAGCAAGCTTGTTCATTCTATCATGCGACATGTCGCTGAGACTCTGGGTATTGATTTGGAGGAATTGTATGTCAATA TTGGCTGGCCTTTGTACAGGAAACATGGACATGCTTTTGAGGCATTCAAAATCATGGTGACTGACCCTGATTCAGTTGTGGGTTCCCTCACTCGTGAAGT CAAGGAAACTGGCCCTGACGGACAGGAGGTAACCAAGGTAGTGCCTGCTGTGTCAGAGGAAATCAAAGAAGCCTTGATCAGGAATATTAGGAGAAGAATG ACCCCACAGCCACTGAAGATACGGGCTGATATTGAGATGAAATGTTTCCAGTTTGATGGCGTTCTCCACATTAAGGATGCAATGCGGAAAGCTGAGGCTG TTGGCAATGCAGATTGTCCTGTGAAAATCAAACTGGTTGCCCCTCCTCTTTATGTTCTCACCACACAAACCCTAGACAAGGAACAAGGAATACAAATTCT CAGCCAAGCAATTGCTGCTTGCACTGAAGCAATAGAGGGGCAGAAGGGGAAACTTGTTGTGAAGGAGCCACCGAGAGCAGTGAGCGAACGAGATGATAAA TTACTTGCTGAGCACATGCTTAAGCTACGGAGTGCCAATGAAGAGATCAGTGGCGATGAAGAGAGTGGCGATGAAGAAGACACAGGGATGGGAGATGCTG ATGTGGAGAACTCAGCGGGCATAGTGGAATGA
AA sequence Show only first row Show all	>Potri.008G072500.1 pacid=42808004 polypeptide=Potri.008G072500.1.p locus=Potri.008G072500 ID=Potri.008G072500.1.v4.1 annot-version=v4.1 MATHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQ TCEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKHGHAFEAFKIMVTDPDSVVGSLTREVKETGPDGQEVTKVVPAVSEEIKEALIRNIRRRM TPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAVGNADCPVKIKLVAPPLYVLTTQTLDKEQGIQILSQAIAACTEAIEGQKGKLVVKEPPRAVSERDDK LLAEHMLKLRSANEEISGDEESGDEEDTGMGDADVENSAGIVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40290			Eukaryotic translation initiat...		Potri.008G072500 [exp]	0	1	ALPHA.7
AT5G28060			Ribosomal protein S24e family ...		Potri.008G152500 [exp]	7.14	0.9344
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Potri.018G066200 [exp]	8.12	0.8761	NMT1.5
AT5G42150			Glutathione S-transferase fami...		Potri.015G038300 [exp]	8.94	0.8881
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	11.22	0.9118
AT1G57720			Translation elongation factor ...		Potri.003G004700 [exp]	14.07	0.9133
AT3G12390			Nascent polypeptide-associated...		Potri.001G034400 [exp]	15.39	0.9198
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Potri.002G257200 [exp]	16.12	0.9143	TOM22.1
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.007G031000 [exp]	16.58	0.9055
AT5G03345			unknown protein		Potri.006G125300 [exp]	22.89	0.8557
AT1G30890			Integral membrane HRF1 family ...		Potri.017G028500 [exp]	23.83	0.8528

Compare expression of checked genes

Potri.008G072500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.