Plant FIBer expression Database

Potri.008G072600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09870 683 / 0 histidine acid phosphatase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G184600
[exp]
804 / 0 AT1G09870 660 / 0.0 histidine acid phosphatase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040951
[exp]
648 / 0 AT1G09870 656 / 0.0 histidine acid phosphatase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0071 His_phosphatase PF00328 His_Phos_2 Histidine phosphatase superfamily (branch 2)
Representative CDS sequence
>Potri.008G072600.1 pacid=42806290 polypeptide=Potri.008G072600.1.p locus=Potri.008G072600 ID=Potri.008G072600.1.v4.1 annot-version=v4.1
ATGTTTGCTATTCTGATCTTTGTGTTGTTATCGATAACGGCGCAATTAAAAGCTGATCATGGATTCGATGTCCGTCACTACCTGTCCACTGTAACAACAT
ATGATGTAGTGAAAGATATTGTCAAAGCTTCTGCTAATAGCACTCCTGATGGTTGCACTCCTATCCACCTAAACCTTGTGGCAAGACATGGAACTCGTTC
CCCTACCAAAAAGCGAATGAGAGAGTTAGACAAGCTGGCTTCTCACTTGGAAGAGCTCATAAAAGATGCTGAAGAACAAAATTTGTCCTTGGAAAAAGTT
CCCTCATGGTTACGGGGATGGAAATCTCCTTGGAGAGGGAAATTGAAAGGTGGAGAATTGATCAGGAAAGGAGAAGAAGAATTGTACAATCTTGGAATCA
GGATCAGAGAGAGATTTCCAGAATTATTTGAAGAGGAATACCACCCGGATGTTTATCCTATAAAGGCTTCACAAGTTCCTCGCGCATCAGCTAGTGCTGT
GGCATTTGGCATGGGGCTGTTAAGTGAGAAGGGAAGTCTGGGACCTGCACGACAACGAGCTTTCGCTGTTACAAGTGAAAGCCGTGCGAGTGACATAATT
TTGAGGTTTCATGATTGTTGTGGAAACTATAAGGTTTTTAGGAAGAGGCAGGAGCCTGCTGTTGATAAGCTTAAGGAACCTGTCCTGGATGAAATCACTT
CTGCATTAGTGAGCCGCTATGGACTCAATTTTACTAGACAGGATGTTGCTATGTTGTGGTTTCTGTGTAAACAGGAAGCATCTGTCTTGGATATAACTGA
TCAAGCTTGTGGTCTCTTCAGCCCTTATGAGGTTGCTTTGCTGGAGTGGACAGATGATCTGGAGATGTTTATATTGAAGGGTTATGGTAATTCAATAAAT
TATCGAATGGGAGTGCCATTACTTGAAGATGTTGTTCAGTCCATGGAGGAAGCCATTAAAGCAAAAGAAGAAAAGCATGCTCCTGGAAGTTATGAGAAGG
CAAGGCTGCGTTTTGCACATGCAGAGACTGTGGTCCCATTTTCATGTCTGCTTGGACTTTTTCTTGATGGTTCTGAATTCCAAAAAATACAAAGGGAAGA
ACCTTTGGAACTTCCTTCAAAACCTCCCCAGAGTAGAAATTGGCGGGGCAGCACTGTGGCTCCTTTTGCTGGTAACAACATGCTGGTCTTGCACAGCTGT
CCTGCAAATTCTGAAAGCAAGTACTTTGTCCAAGTTCTCCACAATGAACATCCTATTCTGATGGCGGGTTGTGGTTCTGATTTTTGCCCATTTGAAGAGT
TTAAGGAAAAAATAGTTGCTCCTCATCTGAAGCACGACTATAACAGTATGTGCACTGTACACCTGGAAGCACCAGAGCAGAAGCCTGTAGCCAGTAAGTT
ATCACAACTGTTTCGTTGGCTCTTCTCTATGCAGAATGATGATACACCGTCCACGAAAGATGATTTATAG
AA sequence
>Potri.008G072600.1 pacid=42806290 polypeptide=Potri.008G072600.1.p locus=Potri.008G072600 ID=Potri.008G072600.1.v4.1 annot-version=v4.1
MFAILIFVLLSITAQLKADHGFDVRHYLSTVTTYDVVKDIVKASANSTPDGCTPIHLNLVARHGTRSPTKKRMRELDKLASHLEELIKDAEEQNLSLEKV
PSWLRGWKSPWRGKLKGGELIRKGEEELYNLGIRIRERFPELFEEEYHPDVYPIKASQVPRASASAVAFGMGLLSEKGSLGPARQRAFAVTSESRASDII
LRFHDCCGNYKVFRKRQEPAVDKLKEPVLDEITSALVSRYGLNFTRQDVAMLWFLCKQEASVLDITDQACGLFSPYEVALLEWTDDLEMFILKGYGNSIN
YRMGVPLLEDVVQSMEEAIKAKEEKHAPGSYEKARLRFAHAETVVPFSCLLGLFLDGSEFQKIQREEPLELPSKPPQSRNWRGSTVAPFAGNNMLVLHSC
PANSESKYFVQVLHNEHPILMAGCGSDFCPFEEFKEKIVAPHLKHDYNSMCTVHLEAPEQKPVASKLSQLFRWLFSMQNDDTPSTKDDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09870 histidine acid phosphatase fam... Potri.008G072600
[exp]
0 1
AT1G21050 Protein of unknown function, D... Potri.002G002000
[exp]
4.47 0.6114
AT1G31830 Amino acid permease family pro... Potri.004G178000
[exp]
5.65 0.5968
AT2G43070 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PE... Potri.014G150000
[exp]
8.48 0.6466
AT1G05180 AXR1 AUXIN RESISTANT 1, NAD(P)-bind... Potri.002G229100
[exp]
9.79 0.6495
AT1G08290 C2H2ZnF WIP3 WIP domain protein 3 (.1) Potri.009G143700
[exp]
18.46 0.5987
AT5G62200 Embryo-specific protein 3, (AT... Potri.012G130800
[exp]
22.91 0.6036
AT3G11050 ATFER2 ferritin 2 (.1) Potri.008G072700
[exp]
24.69 0.6400 PFE2.2
AT3G18280 Bifunctional inhibitor/lipid-t... Potri.017G118700
[exp]
35.41 0.6360
AT2G42610 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10,... Potri.004G057300
[exp]
40.24 0.6022
AT1G24450 NFD2 NUCLEAR FUSION DEFECTIVE 2, Ri... Potri.012G078400
[exp]
46.94 0.5758

Potri.008G072600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.