Plant FIBer expression Database

PFE2.2 (Potri.008G072700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PFE2.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11050 330 / 9e-115 ATFER2 ferritin 2 (.1)
AT2G40300 323 / 3e-112 ATFER4 ferritin 4 (.1)
AT3G56090 296 / 2e-101 ATFER3 ferritin 3 (.1)
AT5G01600 294 / 1e-100 ATFER1 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
AT3G61010 84 / 4e-18 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G184500
[exp]
408 / 1e-145 AT3G11050 311 / 2e-107 ferritin 2 (.1)
Potri.006G103900
[exp]
310 / 7e-107 AT5G01600 262 / 3e-88 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.016G124700
[exp]
299 / 1e-102 AT5G01600 294 / 8e-101 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.016G124900
[exp]
294 / 8e-101 AT5G01600 264 / 4e-89 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007523
[exp]
337 / 7e-118 AT2G40300 360 / 4e-127 ferritin 4 (.1)
Lus10017433
[exp]
334 / 1e-116 AT2G40300 366 / 3e-129 ferritin 4 (.1)
Lus10002865
[exp]
313 / 5e-108 AT5G01600 331 / 2e-115 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10012233
[exp]
310 / 5e-107 AT5G01600 333 / 4e-116 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10022673
[exp]
299 / 1e-102 AT5G01600 339 / 1e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10012499
[exp]
293 / 2e-100 AT5G01600 338 / 3e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0044 Ferritin PF00210 Ferritin Ferritin-like domain
Representative CDS sequence
>Potri.008G072700.4 pacid=42806477 polypeptide=Potri.008G072700.4.p locus=Potri.008G072700 ID=Potri.008G072700.4.v4.1 annot-version=v4.1
ATGTTACTTAAGGCGGCACCAGCCTTTTCTCTGTTGAATACTAGAGGGGATAGTTTGGGTCCCCTGTTTTCCTCCGCTTCTTCTTTGTCTAACAATAATC
TTGCTGTTTCTCCTTCAATTCTTCGCTCAAAAACTGGGTCTGGATTTCTTGTTTGTGCTTCAAAAGGGGCTACTAATAAGTCTTTAATTGGTGTTGTCTT
TAAGCCTTTCGAGGAGGTTAAGAAAGAACTCAATCTCGTGCCTACTTTGCCACATGTTTCTCTTGCTAGACAGAAGTTTACTGATGAGAGTGAAGCCGCC
ATCAATCAACAGATCAATGTGGAGTACAATGTCTCATATGTGTACCATGCCATGTTTGCCTACTTTGATAGAGATAATGTGGCACTCAAGGGCCTTGCCA
ATTTTTTCAAGGAATCAAGTATTGAAGAAAGAGAGCATGCTGAGAAATTGATGGAATACCAGAACAAAAGAGGTGGAAAAGTGAAGCTGCATTCTATTTT
GATGCCCCTCTCTGAGTTTGATCATACGGAAAAAGGAGATGCGCTGTATGCTATGGAGCTTGCCTTGTGTTTGGAGAAACTAACAAATGAAAAGCTCCTG
AACTTGCATAGTGTGGCTGATCGGAACAATGATGTGCAGTTGGTAGATTTTGTTGAAAGTGAGTTTTTAGCCGAGCAGGTGGAATCTATCAAAAAGATCT
CAGAATATGTTTCTCAGCTGAGAAGGGTGGGCAAAGGACATGGAGTATGGCACTTCGACCAGATGCTCCTCCGTGCGGAAGAAGCGGTTGCATAA
AA sequence
>Potri.008G072700.4 pacid=42806477 polypeptide=Potri.008G072700.4.p locus=Potri.008G072700 ID=Potri.008G072700.4.v4.1 annot-version=v4.1
MLLKAAPAFSLLNTRGDSLGPLFSSASSLSNNNLAVSPSILRSKTGSGFLVCASKGATNKSLIGVVFKPFEEVKKELNLVPTLPHVSLARQKFTDESEAA
INQQINVEYNVSYVYHAMFAYFDRDNVALKGLANFFKESSIEEREHAEKLMEYQNKRGGKVKLHSILMPLSEFDHTEKGDALYAMELALCLEKLTNEKLL
NLHSVADRNNDVQLVDFVESEFLAEQVESIKKISEYVSQLRRVGKGHGVWHFDQMLLRAEEAVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11050 ATFER2 ferritin 2 (.1) Potri.008G072700
[exp]
0 1 PFE2.2
AT5G13920 GRF zinc finger / Zinc knuckle... Potri.009G112676
[exp]
3.00 0.7941
AT3G14280 unknown protein Potri.001G163100
[exp]
6.00 0.7626
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Potri.015G027800
[exp]
7.34 0.7711
AT5G28490 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPEND... Potri.013G046500
[exp]
7.74 0.7398
AT2G42610 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10,... Potri.004G057300
[exp]
8.94 0.6958
AT4G00430 PIP1;4, TMP-C, ... TRANSMEMBRANE PROTEIN C, PLASM... Potri.006G098100
[exp]
9.16 0.7152 Pt-MDPIP1.4
Potri.005G038200
[exp]
9.21 0.7546
AT4G18710 DWF12, UCU1, BI... ULTRACURVATA 1, DWARF 12, BRAS... Potri.004G059000
[exp]
9.53 0.7179 GSK1.2
Potri.012G125200
[exp]
9.94 0.7284
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Potri.003G197200
[exp]
13.26 0.7336

Potri.008G072700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.