Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11040 171 / 9e-50 AtENGase85B Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1) AT5G05460 150 / 2e-42 AtENGase85A Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184300 [exp] 194 / 4e-58 AT5G05460 727 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) Potri.010G184200 [exp] 187 / 3e-55 AT5G05460 765 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007526 [exp] 185 / 1e-54 AT3G11040 719 / 0.0 Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1) Lus10017430 [exp] 168 / 2e-48 AT5G05460 715 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF03644 [poplar] [flax] Glyco_hydro_85 Glycosyl hydrolase family 85
Representative CDS sequence Show only first row Show all	>Potri.008G073001.2 pacid=42808473 polypeptide=Potri.008G073001.2.p locus=Potri.008G073001 ID=Potri.008G073001.2.v4.1 annot-version=v4.1 ATGCAAGGAGGTTATGTGAATGACAAGTGGGTTCAAGGAGGGACTAATCCTGATGCTTATGCTACTTGGCATTGGTATTTGATTGATGTTTTCGTCTACT TCTCTCATAGTTTGGTTACCTTGCCTCCTCCTTGCTGGACTAATACTGCTCACAGACGTGGTGTCAAGGTGTTTGGGACTTTCATAACAGAATGGGATGA AGGAAAACTTGTCCGCAATAAATTGCTTGCAACAATGAAGTCTGCTCGGATGAATGCTGAGCGATTGGCAGAGCTTGCTGTTGATTTGGGCTTTGATGGA TGGCTGAGTAACTATCCAGATCTTTCAGCTGCTGTGGCTGGAAATAGAAAGTTTGATGTCTACATGGGAATGGATGTATTTGGAAGGAAAACTTTTGGTG GTGGACAATGGAACGTTGTTTCTACGTTGTCCTTGAGTAACCATGTGATTCCGCTACTTGTTGGGACTGATCATTGTCTGAATGTCGTTCATGATCTTCA CAAGTGTAAACATCAAGCATGCTTCCAAGCACTGACAAACTTGATATTGTTCAGGGTCAAGGCTATCGTGTTTCTGTCAAGGGCAACCAACTAA
AA sequence Show only first row Show all	>Potri.008G073001.2 pacid=42808473 polypeptide=Potri.008G073001.2.p locus=Potri.008G073001 ID=Potri.008G073001.2.v4.1 annot-version=v4.1 MQGGYVNDKWVQGGTNPDAYATWHWYLIDVFVYFSHSLVTLPPPCWTNTAHRRGVKVFGTFITEWDEGKLVRNKLLATMKSARMNAERLAELAVDLGFDG WLSNYPDLSAAVAGNRKFDVYMGMDVFGRKTFGGGQWNVVSTLSLSNHVIPLLVGTDHCLNVVHDLHKCKHQACFQALTNLILFRVKAIVFLSRATN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Potri.008G073001 [exp]	0	1
					Potri.009G112922 [exp]	1.00	0.9229
AT4G20020			unknown protein		Potri.004G218800 [exp]	3.74	0.8869
AT1G10390			Nucleoporin autopeptidase (.1....		Potri.011G148800 [exp]	7.34	0.8186
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.008G081200 [exp]	12.00	0.8356
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	14.24	0.8367
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.003G106200 [exp]	14.38	0.8122
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	15.29	0.8369
AT5G58510			unknown protein		Potri.001G280832 [exp]	15.68	0.7619
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	16.73	0.8370
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	22.18	0.8276

Compare expression of checked genes

Potri.008G073001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.