Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40320 692 / 0 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 587 / 0 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT3G55990 389 / 3e-132 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 376 / 4e-128 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT5G01360 372 / 2e-126 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G73140 364 / 1e-123 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01620 365 / 2e-123 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 345 / 4e-116 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT2G40160 322 / 7e-107 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G12060 254 / 5e-79 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184000 [exp] 781 / 0 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187600 [exp] 387 / 2e-131 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 382 / 2e-130 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G069900 [exp] 384 / 3e-130 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.001G376700 [exp] 375 / 9e-128 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.016G125500 [exp] 369 / 1e-125 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.016G125600 [exp] 364 / 5e-123 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.010G187500 [exp] 363 / 7e-123 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 348 / 1e-116 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009839 [exp] 684 / 0 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 682 / 0 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10017428 [exp] 565 / 0 AT2G40320 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10028974 [exp] 385 / 6e-131 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 382 / 5e-130 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 380 / 9e-130 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10030396 [exp] 375 / 6e-127 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 367 / 2e-124 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10005042 [exp] 367 / 3e-124 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10007528 [exp] 340 / 7e-116 AT2G40320 357 / 7e-123 TRICHOME BIREFRINGENCE-LIKE 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.008G073300.2 pacid=42808725 polypeptide=Potri.008G073300.2.p locus=Potri.008G073300 ID=Potri.008G073300.2.v4.1 annot-version=v4.1 ATGAAGCAACCGTTCACTGCTTCCTCTTCTTCTTCATCTCTAATCAGAAAGGCCCGTCTCTCTCCTTACCTCTTCACTTTATTAGCCTTCATTGTCTTTG TTGCCATCCTTTATGGCGAGGACTTCGTGTGCCTCCTTGGCCAACTTGACCCCAACGTGGACCGGCTAGCAACCATAACCGAGAAGAGGTGGGAGAAGCT ACCTTTCTCAATAGGGAAGGCCCCAGATGGTTGTGACTTGTTTAGTGGGAGGTGGGTGTGGGACGATTCAACTCGGCCTCTTTACGAAGAATCGGAGTGT CCGTACATACAGCCACAGTTGACATGTCAAGAGCATGGCAGGCCTGATAAGGATTATCAATACTGGAGATGGCAACCTTATGGCTGTGATCTTCCCAGTT TTAATGCCACGTTGATGCTTGAGACCTTACGAGGAAAAAGAATGATGTTTGTTGGCGATTCCTTAAATCGAGGTCAATATGTCTCCATGGTCTGTCTTCT TCACAGACTCATCCCTGAAGGCCAAAAATCCATGGAAACGTTCGATTCTTTAACAGTCTTCACTGCCAAGGAATACAATGCAACAATTGAGTTCTATTGG GCACCATTTCTCCTTGAATCAAACTCGGATAATGCCATCGTTCATAGAATATCAGATAGAATTGTGAGGAAAGGTTCAATCAATAAACATGGCAAAAATT GGAAAGGCGTTGATATTATTGTCTTCAATACTTACCTATGGTGGATGACTGGCCTCAAGATGAAAGTCTTGCACGGTTCTTTTGAAGATGAAACGAAAGA TATCATAGAGCTGTCAACTGAGGATGCCTATCGTATGGCAATGAAAAGCATGTTGAGATGGGTGAGAAAGAATATGGACCGCAAGAAAACAAGGGTCTTT TTCACTAGCATGTCACCTTCTCATGGCAAGAGCATAGATTGGGGAGGCGAAGCGGGTCTTAACTGTTTCAATGAAACTACTTTGATAAACAATGCCACGT ACTGGGGATCGGATTGCAGGAAAAGCATAATGGAAGTAATTGGAGATGTGTTTAGGAAATCAAAATTCCCCATCACATTTCTTAACATCACACAACTCTC AAATTACCGCAAAGATGCGCACACCTCAATACACAAGAAGCAATGGAATCCCCTGACTCCTGAGCAAATTGCTAATCCTGTCAGCTATGCAGATTGTGTG CACTGGTGTTTGCCAGGCCTTCAAGACACCTGGAACGAACTCTTATTTGCCAAGCTGTTCTATCCTTAA
AA sequence Show only first row Show all	>Potri.008G073300.2 pacid=42808725 polypeptide=Potri.008G073300.2.p locus=Potri.008G073300 ID=Potri.008G073300.2.v4.1 annot-version=v4.1 MKQPFTASSSSSSLIRKARLSPYLFTLLAFIVFVAILYGEDFVCLLGQLDPNVDRLATITEKRWEKLPFSIGKAPDGCDLFSGRWVWDDSTRPLYEESEC PYIQPQLTCQEHGRPDKDYQYWRWQPYGCDLPSFNATLMLETLRGKRMMFVGDSLNRGQYVSMVCLLHRLIPEGQKSMETFDSLTVFTAKEYNATIEFYW APFLLESNSDNAIVHRISDRIVRKGSINKHGKNWKGVDIIVFNTYLWWMTGLKMKVLHGSFEDETKDIIELSTEDAYRMAMKSMLRWVRKNMDRKKTRVF FTSMSPSHGKSIDWGGEAGLNCFNETTLINNATYWGSDCRKSIMEVIGDVFRKSKFPITFLNITQLSNYRKDAHTSIHKKQWNPLTPEQIANPVSYADCV HWCLPGLQDTWNELLFAKLFYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.008G073300 [exp]	0	1
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	2.00	0.9317
AT1G63110			GPI transamidase subunit PIG-U...		Potri.001G109200 [exp]	3.46	0.9297
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Potri.007G131300 [exp]	3.46	0.9196	GLX2.2
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Potri.001G225700 [exp]	4.58	0.9178
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	5.29	0.9270
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	5.47	0.9227
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.004G163200 [exp]	8.30	0.8668
AT5G12850	C3HZnF	PEI1	CCCH-type zinc finger protein ...		Potri.001G258400 [exp]	9.21	0.8765
AT2G27930			PLATZ transcription factor fam...		Potri.006G119400 [exp]	10.19	0.8872
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G118100 [exp]	11.13	0.8562

Compare expression of checked genes

Potri.008G073300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.