Plant FIBer expression Database

Potri.008G074100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
AT1G52670 135 / 2e-38 Single hybrid motif superfamily protein (.1)
AT3G15690 134 / 6e-38 Single hybrid motif superfamily protein (.1.2)
AT5G15530 47 / 6e-06 BCCP2, CAC1-B biotin carboxyl carrier protein 2 (.1)
AT5G16390 44 / 3e-05 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G183200
[exp]
384 / 5e-136 AT3G56130 222 / 6e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Potri.003G061400
[exp]
135 / 4e-38 AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2)
Potri.001G172600
[exp]
130 / 2e-36 AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2)
Potri.017G092500
[exp]
42 / 0.0002 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Potri.004G119000
[exp]
41 / 0.0004 AT5G15530 173 / 7e-53 biotin carboxyl carrier protein 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009843
[exp]
265 / 1e-88 AT3G56130 242 / 1e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10010226
[exp]
257 / 7e-86 AT3G56130 238 / 4e-78 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10017424
[exp]
256 / 1e-85 AT3G56130 240 / 4e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10040959
[exp]
233 / 2e-75 AT3G56130 238 / 6e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10011480
[exp]
130 / 2e-36 AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1)
Lus10023118
[exp]
125 / 2e-34 AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2)
Lus10020619
[exp]
42 / 0.0003 AT5G16390 204 / 9e-65 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0105 Hybrid PF00364 Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence
>Potri.008G074100.1 pacid=42807659 polypeptide=Potri.008G074100.1.p locus=Potri.008G074100 ID=Potri.008G074100.1.v4.1 annot-version=v4.1
ATGGAGTCCTCTGTTCTTCTTCGATCCTTTCAGTGTAACTTGCTCGCTCAAGGTCAAGGCTTGACTGTTGGCAGGAAACTGATATCTTATCCATCAAAGA
GAAATCTAAGACTAGTATCCTGTGTAAAAACATCTGAAGCTCCTGCAATAGCCAAGAGTGATGATGGCAATAAACAAGGGTCATTGGAGAAGAATTCTCT
GCGAAATGCAACTTTTCCGAATGGATTTGAAGCATTGGTACTAGAGGTCTGTGATGAGACAGAGATTGCTGAGCTGAAACTGAAGGTCGGGGACTTTGAA
ATGCATCTGAAGCGGAACGTTGGGGCTGCGAAAGCTCCCTTGATATCATCAACACCACTACCACCTATTCCAACTCCACCAATGGAGGTATCAGCAGCTG
TTTCTCCATCGCCATCGCCATCTAAATCCTCTGTCGAGAAAACCACTCCCTTTACAAATGTCTCCTTTGGGAAGTCATCTAAGCTGGCAGCATTAGAGGC
TTCTGGAGCTAGTGGATATGTTCTAGTTGCTTCTCCAACTGTTGGCTCATTCCGAAGGAACAGAACAGTGAAAGGAAAGAAGCAGCCTCCTATCTGTAAA
GAGGGTGATGTGATTAAAGAAGGACAAGTGATAGGATATTTGGATCAATTTGGTACTGAACTTCCTGTTAAGTCTGATGTGGCGGGAGAAGTACTAAAGC
TCCTCTTCAATGATGGAGATGCAGTTGGGTATGGAGACCCTCTTATAGCTGTCTTGCCATCATTTCATGGTATCAACACCTGA
AA sequence
>Potri.008G074100.1 pacid=42807659 polypeptide=Potri.008G074100.1.p locus=Potri.008G074100 ID=Potri.008G074100.1.v4.1 annot-version=v4.1
MESSVLLRSFQCNLLAQGQGLTVGRKLISYPSKRNLRLVSCVKTSEAPAIAKSDDGNKQGSLEKNSLRNATFPNGFEALVLEVCDETEIAELKLKVGDFE
MHLKRNVGAAKAPLISSTPLPPIPTPPMEVSAAVSPSPSPSKSSVEKTTPFTNVSFGKSSKLAALEASGASGYVLVASPTVGSFRRNRTVKGKKQPPICK
EGDVIKEGQVIGYLDQFGTELPVKSDVAGEVLKLLFNDGDAVGYGDPLIAVLPSFHGINT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56130 biotin/lipoyl attachment domai... Potri.008G074100
[exp]
0 1
AT5G46290 KAS1, KAS I, KA... KETOACYL-ACP SYNTHASE 1, 3-ket... Potri.004G131500
[exp]
1.73 0.8451 I.2
AT2G30200 EMB3147 EMBRYO DEFECTIVE 3147, catalyt... Potri.009G077800
[exp]
2.44 0.8411
AT5G16660 unknown protein Potri.019G041700
[exp]
4.47 0.8397
AT5G10160 Thioesterase superfamily prote... Potri.003G020300
[exp]
6.00 0.8335
AT3G51470 Protein phosphatase 2C family ... Potri.007G058700
[exp]
6.48 0.8181
AT1G80560 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DE... Potri.001G185600
[exp]
7.21 0.7952
AT1G42960 unknown protein Potri.007G064100
[exp]
8.12 0.8067
AT1G71260 WHY2, ATWHY2 WHIRLY 2 (.1) Potri.003G048700
[exp]
10.95 0.7790
AT4G23820 Pectin lyase-like superfamily ... Potri.003G139100
[exp]
11.61 0.8350
AT5G13120 Pnsl5, ATCYP20-... Photosynthetic NDH subcomplex... Potri.003G167700
[exp]
14.69 0.8132

Potri.008G074100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.