Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01660 489 / 2e-164 unknown protein AT3G11000 198 / 1e-55 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT3G27090 115 / 3e-28 DCD (Development and Cell Death) domain protein (.1) AT2G35140 108 / 3e-24 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT5G42050 104 / 5e-24 DCD (Development and Cell Death) domain protein (.1) AT2G32910 97 / 1e-20 DCD (Development and Cell Death) domain protein (.1) AT5G61910 91 / 1e-18 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT1G67480 57 / 3e-08 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G27910 56 / 3e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 54 / 1e-07 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127600 [exp] 578 / 0 AT5G01660 628 / 0.0 unknown protein Potri.017G069100 [exp] 115 / 3e-28 AT3G27090 426 / 1e-151 DCD (Development and Cell Death) domain protein (.1) Potri.001G330300 [exp] 113 / 1e-27 AT3G27090 424 / 6e-151 DCD (Development and Cell Death) domain protein (.1) Potri.003G141900 [exp] 113 / 1e-26 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.001G088800 [exp] 111 / 3e-26 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.019G066100 [exp] 103 / 2e-24 AT3G27090 251 / 2e-83 DCD (Development and Cell Death) domain protein (.1) Potri.015G122300 [exp] 105 / 4e-23 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.001G136300 [exp] 89 / 1e-18 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.013G029200 [exp] 83 / 2e-16 AT2G32910 187 / 3e-51 DCD (Development and Cell Death) domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018307 [exp] 362 / 6e-114 AT5G01660 276 / 3e-82 unknown protein Lus10040599 [exp] 231 / 2e-68 AT5G01660 179 / 8e-50 unknown protein Lus10012220 [exp] 191 / 2e-53 AT5G01660 224 / 1e-66 unknown protein Lus10041557 [exp] 117 / 1e-28 AT3G27090 428 / 2e-152 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 117 / 1e-28 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1) Lus10023059 [exp] 114 / 4e-27 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10032412 [exp] 112 / 9e-27 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10001728 [exp] 100 / 1e-21 AT2G32910 208 / 1e-57 DCD (Development and Cell Death) domain protein (.1) Lus10004128 [exp] 99 / 5e-21 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10018316 [exp] 98 / 1e-20 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif CL0186 [poplar] [flax] PF10539 [poplar] [flax] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Potri.008G074200.3 pacid=42807748 polypeptide=Potri.008G074200.3.p locus=Potri.008G074200 ID=Potri.008G074200.3.v4.1 annot-version=v4.1 ATGGGTGCAGGAAGGAAGACACGGACACTCCACTTAAAGGAGAAATCAGTATCTCAAACGTCAGTTAATAGCAGTATAACAGCTAGGAATCTGAGGAAGA GTGATCTAGCTGGAGTAATATTTGGATGCAAGAATAATACAATCAGAGAATGTTTCTCAAAACAGTTGTTTGGAATACCAGGTTCACATTACTCCTATGT AAAGAAAATAGATCCTGGTTTACCATTGTTTTTATTCAACTACAGTGACAGGAAGCTTCATGGCATATTTGAGGCTACCAGTCATGGAGGATGGAATATT GATCCAAATGCCTGGACTGAAGATGGCTCAGGCATTACCCCATACTCTGCACAGGTTAGGATACGAGTCCAGATGCAGTGCCAGCCATTAGTGGAAGATC AGTTCAGTCCAATCATCGCAGAAAACTACTATAGACCAAACCTTTTTTGGTTTGAACTAGACCAGGATCAAACAAACAAGTTTATCTCAAAATTCTCATC TTCACTGGTCATTGCAAGTACCAAGGATATGCACAACTGGAATTATCTGCCTTGTGATCCTAATGCGAGGCAAGAAAATGACTATATGGATAAATTTAAT GATTGTAAAGAGAGCACCACGACCTCTAGCCTTCCTCTGAAACCATGGAGTGCCTTGTTTAAATTTGAAACCTGTCCCGATACAAGAGCAATGGCCGAAA AGGAGAACGCTGAGTCATCCAATGTAAATCTTACAAATCTCGATACATCCATTGCAGATCATATTGGTGTTGAAACATGTATTGATTCTACCATTAAGAA AAAATCACTGTCTGCTTTGTTTACAAAGAGCACTGATCCTGGTGCAAGCGAGATGACAGCAGAAGATAATAATGAATCATGTGATGCAAGCGTGGGCAAC GTTGAAAATCTGGATGCCAATAAGTTAAGCATAACAACCTGCATGGCTACTGCTTTTCCAGAAAAACCATGGAGTACTTGGTGTGAAAGTGAAAACAGAT CTGATGCAAGAGAGGTGATGGCAGTGGGTAGTGATGAAGAAAACTCTGAGGTAGATTCACAGGAAAGAAACAACTCAGAAATGGAGTCTTTATATCTTCG TTCCGTGCTAGCCAAGTTATCTATGGAATTGGAAGATTTGAAATCATCTCAGTCAAGTCAAGTTCAAAAAATCAGTTATTTGGAGCATGAGCTGGTTCAA TCACGAAATGAAATTAAACAACTAAAAGATCGGTGCAAGATGTTGGAGTATGTGTCCTTTCCAGCAATGGGTCATCTTGCAGAAGATGGGTCTGAGCTAG AAGAATTCAACTCTTGCAGTGATGAGTTGATACTAATAGGAGGGTTTGATGGTTCTTCGTGGCTGTTGGGTTTGGACTCTTATTCTCCTTCACAGGACCA GATGGAATCTCTCACTTCAATGAGTGCTATACGCAGATATGCCTCAGCAGGAAGGTTAAATGGTGAAATCTATATATTTGGTGGTGCAAATGACGATGTC TGGTATGACACAGTGGAATCATACAACCCTTCGATCAAGCAGTGGAGTTCTCGACCTTCCTTAAAGCGAAGAAAGGGAAGTGTGGCAAGTGTTTCTTTGG AGGACAAGATGCTTGCAGTTGGAGGTGGTGATGGGGTTGAATGCTTTTCTGAGGTGGAAATATTTGATCTGAATGTTGGAAGGTGGATCCCTACTCAATC AATGCGTAACAAGCGATTTGCAGCTGCTGCAGCAGAAATTAATGGCATGCTCTACGTTGCTGGGGGATACAATGGAAAGGAATACTTAAAGTCAGTTGAA AGATATGATCTACGAGAACATACATGGGCAAGACTTGACAGTATGACCACAAAGAGAGGGTCACTTTCTTTGGTTGCTATGAATGAGAAATTGTATGCTT TGGGGGGCTATGACGGGGACAGGATGGTATCAACAGTTGAGGTATTTGATCCTCGTGCTGGTTTGTGGAGGGAGGCAGAATCCATGAACAGTTCCAGGGG ATATTTTGGTGATGTTGCGATGGGAGATTCAATTTATGTCATTGGGGGGCTGGATAATGATAATCAAATACTAGACACGGTTGAGTGTTTCAGGGAAGGC CATGGATGGCAGGAGGGTTTCTCGAAAGCCATTGGGAAAAGATGCTTCCTCTCTGCTGTTGTTGTCTGA
AA sequence Show only first row Show all	>Potri.008G074200.3 pacid=42807748 polypeptide=Potri.008G074200.3.p locus=Potri.008G074200 ID=Potri.008G074200.3.v4.1 annot-version=v4.1 MGAGRKTRTLHLKEKSVSQTSVNSSITARNLRKSDLAGVIFGCKNNTIRECFSKQLFGIPGSHYSYVKKIDPGLPLFLFNYSDRKLHGIFEATSHGGWNI DPNAWTEDGSGITPYSAQVRIRVQMQCQPLVEDQFSPIIAENYYRPNLFWFELDQDQTNKFISKFSSSLVIASTKDMHNWNYLPCDPNARQENDYMDKFN DCKESTTTSSLPLKPWSALFKFETCPDTRAMAEKENAESSNVNLTNLDTSIADHIGVETCIDSTIKKKSLSALFTKSTDPGASEMTAEDNNESCDASVGN VENLDANKLSITTCMATAFPEKPWSTWCESENRSDAREVMAVGSDEENSEVDSQERNNSEMESLYLRSVLAKLSMELEDLKSSQSSQVQKISYLEHELVQ SRNEIKQLKDRCKMLEYVSFPAMGHLAEDGSELEEFNSCSDELILIGGFDGSSWLLGLDSYSPSQDQMESLTSMSAIRRYASAGRLNGEIYIFGGANDDV WYDTVESYNPSIKQWSSRPSLKRRKGSVASVSLEDKMLAVGGGDGVECFSEVEIFDLNVGRWIPTQSMRNKRFAAAAAEINGMLYVAGGYNGKEYLKSVE RYDLREHTWARLDSMTTKRGSLSLVAMNEKLYALGGYDGDRMVSTVEVFDPRAGLWREAESMNSSRGYFGDVAMGDSIYVIGGLDNDNQILDTVECFREG HGWQEGFSKAIGKRCFLSAVVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01660			unknown protein		Potri.008G074200 [exp]	0	1
AT4G07515			Protein of unknown function (D...		Potri.004G110610 [exp]	1.00	0.9461
AT2G27330			RNA-binding (RRM/RBD/RNP motif...		Potri.009G160300 [exp]	4.89	0.8070
					Potri.008G185350 [exp]	13.11	0.8215
					Potri.019G001550 [exp]	20.85	0.8163
AT3G30387			Protein of unknown function (D...		Potri.004G110681 [exp]	32.44	0.8039
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.001G070301 [exp]	36.33	0.7555
					Potri.016G052100 [exp]	37.14	0.7997
					Potri.010G199150 [exp]	42.33	0.8000
AT3G17380			TRAF-like family protein (.1)		Potri.008G199400 [exp]	45.43	0.7993
					Potri.006G216950 [exp]	49.11	0.7990

Compare expression of checked genes

Potri.008G074200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.