Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34930 295 / 6e-96 arogenate dehydrogenase (.1) AT1G15710 280 / 2e-93 prephenate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G062600 [exp] 286 / 7e-92 AT5G34930 858 / 0.0 arogenate dehydrogenase (.1) Potri.001G201100 [exp] 271 / 5e-90 AT1G15710 469 / 2e-166 prephenate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023121 [exp] 273 / 2e-90 AT1G15710 483 / 8e-172 prephenate dehydrogenase family protein (.1) Lus10011483 [exp] 142 / 1e-41 AT1G15710 253 / 2e-84 prephenate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02153 [poplar] [flax] PDH Prephenate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.008G074500.1 pacid=42806474 polypeptide=Potri.008G074500.1.p locus=Potri.008G074500 ID=Potri.008G074500.1.v4.1 annot-version=v4.1 ATGGCTGTTTCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCTTCCAGAAATCTGAAAATAGGTATAGTGGGCTTTGGCCCCTTTGCAC AGTTCCTGGCAAAGATCATGATCAAACAAGGGCATACTTTACGGGCAACTTCTCGTTCCGATCATTCTTCCCTCTGCCAAGATTTGGGCATCTCATTCTT CAGGGACACGGGCACATTTCTTGAAGCAAATAATGATGTCATTTTGATTTGTACATCAATCCTATCCCTATCGAAGGTTCTCAATACAATGCCACTACAT TGCCTGAAACGGTCACCTCTCTTTGTGGATGTTCTCTCAGTCAAAGAGTACCCGAGAGATATTCTATTGAAAGTACTGCCAGAGGAATTGGATGTGTTGT GCACTCATCCGATGTTTGGGCCGGAGAGTGGGAAAAATGGATGGAAAGATCTTGCTTTTATGTATGAAAGAGTTCGAATAAAGGACGAAGCTACGTGCTC AAGTTTTCTACGAATTTTCGAAACTGAGGGTTGTAGAATGCTGGAAATGTCTTGTGAAGAACATGATATGGTAGCTGCACGGAGTCAATTTCTTACTCAC ACAATTGGGAGGATTTTATCGGAAATGGAGGTCAAGCCCACATCTATGAGCACAAAAGGTTTTGAGACACTGATTCATCTGAAAGAGAGCACCATGAAAG ACAGCTCTGACCTGTTTAGTGGCTTATTCGTCTATAATAGATTTGCCAAACAAGAGCTGAAGAACCTAGAACTTTCGTTAGAAAAGGTTAAGCAAATGCT ACAAGACAAGATGACCGAAGAGCAGAATCTGAATGAGTCTAAGTTTTGA
AA sequence Show only first row Show all	>Potri.008G074500.1 pacid=42806474 polypeptide=Potri.008G074500.1.p locus=Potri.008G074500 ID=Potri.008G074500.1.v4.1 annot-version=v4.1 MAVSSSSSSSSSSSSSSPSRNLKIGIVGFGPFAQFLAKIMIKQGHTLRATSRSDHSSLCQDLGISFFRDTGTFLEANNDVILICTSILSLSKVLNTMPLH CLKRSPLFVDVLSVKEYPRDILLKVLPEELDVLCTHPMFGPESGKNGWKDLAFMYERVRIKDEATCSSFLRIFETEGCRMLEMSCEEHDMVAARSQFLTH TIGRILSEMEVKPTSMSTKGFETLIHLKESTMKDSSDLFSGLFVYNRFAKQELKNLELSLEKVKQMLQDKMTEEQNLNESKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G34930			arogenate dehydrogenase (.1)		Potri.008G074500 [exp]	0	1
AT2G46110		PANB1, KPHMT1	ketopantoate hydroxymethyltran...		Potri.014G090500 [exp]	3.46	0.7814
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.014G071100 [exp]	8.83	0.7276
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Potri.010G143000 [exp]	9.79	0.7725
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.014G126000 [exp]	17.14	0.7468
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.019G133200 [exp]	19.13	0.7743
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Potri.005G145500 [exp]	19.28	0.7276	LBD37.2
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Potri.010G114400 [exp]	20.97	0.7095	/IMPCH1
AT5G04590		SIR	sulfite reductase (.1)		Potri.001G257000 [exp]	24.81	0.6877	Pt-SIR.2
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	30.74	0.6965
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014512 [exp]	30.98	0.6856

Compare expression of checked genes

Potri.008G074500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.