Plant FIBer expression Database

Potri.008G074800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40410 478 / 4e-171 Staphylococcal nuclease homologue (.1.2)
AT3G56170 444 / 1e-157 CAN Ca-2+ dependent nuclease, Ca-2+ dependent nuclease (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G182500
[exp]
572 / 0 AT2G40410 477 / 1e-170 Staphylococcal nuclease homologue (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040967
[exp]
515 / 0 AT2G40410 484 / 2e-173 Staphylococcal nuclease homologue (.1.2)
Lus10041146
[exp]
146 / 1e-42 AT2G40410 125 / 7e-35 Staphylococcal nuclease homologue (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0049 Tudor PF00565 SNase Staphylococcal nuclease homologue
Representative CDS sequence
>Potri.008G074800.1 pacid=42808491 polypeptide=Potri.008G074800.1.p locus=Potri.008G074800 ID=Potri.008G074800.1.v4.1 annot-version=v4.1
ATGGGAAATGCCCTGAGATTCCTGTGTGGGCATTGTTGCAAACCAACAGAAGCAGGGGACTCTTATTCATTGGGACCACACGGTGTATCAGCGGCCACAG
TTGGTGTTTCAGCTCTTGCCCGTGACTTGTTACACTTTGAAATCACATCTCAGGTCCCAGAAGGACTTGGCAAGCATGTGGTTTCATCCAAGAAGGCTCA
AGCTAACTGGTATAGAAAGTTGTTGGAGGCCTGGAAAGAAGCAAAACCGCCACCAAAAACTCCTGAAGAAGCTGCTAGGCTGGTTATTCAGACCTTGAAG
AGACACCAAAAGGCAGATGTTGAGGGTTTATTGGCTTTCTATGGTCTCCCACTTCCTCACACGCTTATTCAAGTTTCTACTGGGATCCCAGCATCATTGC
CTGAAGGGGTCAAGTTTGAGATGCCAACACTACCAGTGGATGCAAAAGCCGTAGCTGATGGAGACACCATTACAGTTTATGTTAGCACGACCGACCCCAG
GGAGTCAGCTTATGTTCCAAGGGAGGTTCAAACGGCTACTGTTCAGAGATCTAAAGCTCGTGCAGAGAGGAACTATGGGAAGGCAGATGCGCTTCATAAA
AAAATTGTTGAAGCAGGATATCGGGTATTAAATATTCAAAATCAGGAGATTCTTGCTCGAAAGTATCGCATTCGATTAAGGGGCATAGATGCACCTGAGA
GTGCAATGCCATATGGGAAAGAGGCGAAAGAGGAGCTTGCTAATCTTGTTCAGGGCAAGTGTTTGAGAATCTTTGTTTATGGAGAAGATCGTTATGGCCG
CTGTGTAGGTGATATATATTGCAATGGAATATTTGTACAGGAAATAATGCTCAAGAAGGGGCTCGCATGGCATTATACTGCTTATGATCAACGCTGGGAA
CTAGAAACATGGGAAAAGGAGGCTCGAGCAAAGCGAGTAGGGTTATGGGCTTCACCAAATCCTGAGAAGCCATGGGAATGGAGAAAGGACAGACGCGAAG
GCAGATAG
AA sequence
>Potri.008G074800.1 pacid=42808491 polypeptide=Potri.008G074800.1.p locus=Potri.008G074800 ID=Potri.008G074800.1.v4.1 annot-version=v4.1
MGNALRFLCGHCCKPTEAGDSYSLGPHGVSAATVGVSALARDLLHFEITSQVPEGLGKHVVSSKKAQANWYRKLLEAWKEAKPPPKTPEEAARLVIQTLK
RHQKADVEGLLAFYGLPLPHTLIQVSTGIPASLPEGVKFEMPTLPVDAKAVADGDTITVYVSTTDPRESAYVPREVQTATVQRSKARAERNYGKADALHK
KIVEAGYRVLNIQNQEILARKYRIRLRGIDAPESAMPYGKEAKEELANLVQGKCLRIFVYGEDRYGRCVGDIYCNGIFVQEIMLKKGLAWHYTAYDQRWE
LETWEKEARAKRVGLWASPNPEKPWEWRKDRREGR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40410 Staphylococcal nuclease homolo... Potri.008G074800
[exp]
0 1
AT3G10540 3-phosphoinositide-dependent p... Potri.008G028800
[exp]
2.00 0.8700
AT1G30900 VSR6, VSR3;3, B... VACUOLAR SORTING RECEPTOR 3;3,... Potri.003G155200
[exp]
6.16 0.8907
AT3G51780 ATBAG4 BCL-2-associated athanogene 4 ... Potri.009G074300
[exp]
7.48 0.8774
AT5G41800 Transmembrane amino acid trans... Potri.003G138100
[exp]
7.74 0.8608
AT2G47900 TUB AtTLP3 tubby like protein 3 (.1.2.3) Potri.010G031000
[exp]
11.48 0.7981
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.002G242500
[exp]
12.12 0.8751
AT2G18060 NAC ANAC037, VND1 Arabidopsis NAC domain contain... Potri.007G014400
[exp]
14.07 0.8432
AT3G10410 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CAR... Potri.008G034800
[exp]
14.14 0.8509
AT4G01850 AtSAM2, SAM-2, ... S-adenosylmethionine synthetas... Potri.014G114700
[exp]
18.02 0.8634 Pt-SAM1.1
AT3G02600 ATLPP3, LPP3 lipid phosphate phosphatase 3 ... Potri.010G119400
[exp]
19.36 0.8206

Potri.008G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.