Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38450 123 / 1e-37 unknown protein AT5G05360 120 / 3e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182400 [exp] 170 / 4e-56 AT2G38450 136 / 4e-42 unknown protein Potri.016G128700 [exp] 123 / 1e-37 AT2G38450 144 / 2e-45 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001262 [exp] 123 / 2e-37 AT2G38450 137 / 2e-42 unknown protein Lus10012213 [exp] 119 / 7e-36 AT5G05360 138 / 2e-42 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08238 [poplar] [flax] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Potri.008G075000.1 pacid=42808316 polypeptide=Potri.008G075000.1.p locus=Potri.008G075000 ID=Potri.008G075000.1.v4.1 annot-version=v4.1 ATGGAAAATAGTTCTCTTATTTTGGATGGCCAAAAACGGGTGCCCTTAGGTCTGGTTGTATCTGATTGTGCTAAAAGATGGTTTCAAGATACATTAAAGG AAGCAAAGACTGGTGATATTACCATGCAAGTTCTTGTGGGTCAGATGTATTTTAATGGCTATGGTGTCCCTAAAGATGTTGAAAAGGGAAGTGATTGGAT GAGTAGAGCTTCAAAACGTCGAATGTCGGTGTGGAAAGTAAGCGATAAACGTCCAGGTTATAATGCAAGTGACTCAGATTCAGATGAAGTGGAGGATGAC AGGAAATAA
AA sequence Show only first row Show all	>Potri.008G075000.1 pacid=42808316 polypeptide=Potri.008G075000.1.p locus=Potri.008G075000 ID=Potri.008G075000.1.v4.1 annot-version=v4.1 MENSSLILDGQKRVPLGLVVSDCAKRWFQDTLKEAKTGDITMQVLVGQMYFNGYGVPKDVEKGSDWMSRASKRRMSVWKVSDKRPGYNASDSDSDEVEDD RK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38450			unknown protein		Potri.008G075000 [exp]	0	1
AT1G04960			Protein of unknown function (D...		Potri.014G160800 [exp]	2.00	0.9103
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.011G085000 [exp]	5.19	0.9093	LCOSC2.5
AT5G14710			unknown protein		Potri.001G349500 [exp]	8.12	0.9056
AT5G49710			unknown protein		Potri.005G157500 [exp]	9.32	0.8611
					Potri.005G172250 [exp]	11.83	0.9039
					Potri.003G153400 [exp]	12.64	0.9022
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.001G221000 [exp]	12.96	0.7610
AT4G27610			unknown protein		Potri.013G076900 [exp]	14.42	0.8664
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.005G141100 [exp]	15.16	0.8395	Pt-AHUS5.1
AT4G18100			Ribosomal protein L32e (.1)		Potri.011G078200 [exp]	17.20	0.8484	RPL32.1

Compare expression of checked genes

Potri.008G075000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.