Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10980 595 / 0 SAG20, WI12, ATWI-12 PLAC8 family protein (.1) AT5G05350 561 / 0 PLAC8 family protein (.1) AT2G40935 44 / 9e-05 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182100 [exp] 820 / 0 AT3G10980 670 / 0.0 PLAC8 family protein (.1) Potri.016G129700 [exp] 600 / 0 AT3G10980 619 / 0.0 PLAC8 family protein (.1) Potri.004G026700 [exp] 52 / 3e-07 AT1G11380 253 / 8e-85 PLAC8 family protein (.1) Potri.011G040100 [exp] 52 / 4e-07 AT1G11380 280 / 5e-95 PLAC8 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017417 [exp] 617 / 0 AT3G10980 624 / 0.0 PLAC8 family protein (.1) Lus10010219 [exp] 596 / 0 AT3G10980 598 / 0.0 PLAC8 family protein (.1) Lus10012212 [exp] 528 / 0 AT3G10980 592 / 0.0 PLAC8 family protein (.1) Lus10001260 [exp] 523 / 0 AT5G05350 584 / 0.0 PLAC8 family protein (.1) Lus10002586 [exp] 55 / 4e-08 AT1G11380 273 / 1e-92 PLAC8 family protein (.1) Lus10018410 [exp] 54 / 5e-08 AT1G11380 270 / 1e-91 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [poplar] [flax] PLAC8 PLAC8 family PF11204 [poplar] [flax] DUF2985 Protein of unknown function (DUF2985)
Representative CDS sequence Show only first row Show all	>Potri.008G075300.1 pacid=42808056 polypeptide=Potri.008G075300.1.p locus=Potri.008G075300 ID=Potri.008G075300.1.v4.1 annot-version=v4.1 ATGGTACTTAAAGCCCAGGATCAAATACCTCTTCAGATTTCAGCATGTAGAAGGACACTATTAAGCAATGAAAACCCACAGAGGAAGTCCCAAGATAGCT TACTTTCCCTTCCTAATAGGATAAACTTTCTTAAATTTGGTTATGCATCTGCCAAATTCAGGCAGTTAGCACAGGAGAGAGACGGCTTTTCACGTTCAGT GACATCTTCGAGTAGCCATGGTCTTCGAGAACGCATTAATGGGGTTTTTGCACGGAAGATTGATTGGACTTTGCTCATGAAAATGGGCAAAGAATGGATC CAGAACCCAATGAACATGGCCCTTTTTGTGTGGATCATGTGTGTTGCTATCTCAGGTGCAATTTTGTTCTTAGTCATGACTGGGATGTTGGACCGTGCAC TACCTAAGAAGTCCCAGAGAGATGTATGGTTTGAAGTCAATAATCAAATTCTCAATGCACTCTCTGCTCTCATGTGTCTGTACCAACACCCAAAGCGGTT TTATGACCTTGTACTTCTCTGTAGATGGAATCCAAAAGACATTTCTAGACTCATAAAGATTTACTTAAAGAATGGGACTTATAAGCCTCATGAGTGGGCG CATATGGTGGTGGTGGTGGTGGCGGCGGCTTTACTCCATCTTAACTGTTTTGCTCAGTATGCACTTTGTGGTCTTAACTTAGGATATAGGAGATCAGAGA GACCAGCCATAGGAGTTGGGATATGCATTTCTGTTGCAATAGCTGCACCTGCAGCTGCTGGTGTATACTCCATTCTTAGTCCCCTTGGGAAGGATTACGA GTCTGAAATAGACGAGGAAGCACAGATGCAGATTTCCGCTGATGAACAAAGAATTCTTGAGACTAGACCACAGTGGAGTGGAGGGATACTTGATTTTTGG GATGATATTTCTATAGCATATCTATCGCTTTTCTGCTCTTTTTGTGTCTTTGGGTGGAATACGGAGAGACTCGGACTTGGGAACATGTATGTTCACATTT TAACTTTTCTCCTCTTTTGCTTGGCCCCTTTCTGGATTTTCAACATGGCTGCTGTTAATATTGATAATGAGACTGTCAGAGAAGCACTAGGTATTACTGG AATTATCCTTTGTGCACTTGGATTATTACTATACGGTGGCTTTTGGAGGATTCAAATGAGAAAGAGATTCAATTTGCTAGCTTACACATTTTGTTGTGGT GAACCAGCTGTTTCTGATTGCACTTTGTGGTTATGTTGTTGTTGGTGCTCTCTTGCTCAGGAAGTTCGAACTGGGAATTCTTATGATATCGTGGAAGATA AGTTCTGTCAGAAGCAAATGAACTGCAGCAACAAGATGCCACTTTCACCTTTCCCCTGCAGAGATGGTTCAAACCCAAGTTCTCCACTTGGAAACAACTC TAGCCCATCCAAGTTTACGATATCTAATTCTCCAAGTCCGAGCACAGTTTCGAAGGGGTATAACACGCCTAGTAGGCAGCTTCTTATGGTGAAAGAAGAG TCTTCTAGAGGAGTTAAGGATGAAACTTTGACTCCACCTACTCCATCATTGATAGAAAGAGAAGCCAATTCAGCTGGAAAAACACGTATATATATAGCAT TTTATTTTGTAATTAATTGA
AA sequence Show only first row Show all	>Potri.008G075300.1 pacid=42808056 polypeptide=Potri.008G075300.1.p locus=Potri.008G075300 ID=Potri.008G075300.1.v4.1 annot-version=v4.1 MVLKAQDQIPLQISACRRTLLSNENPQRKSQDSLLSLPNRINFLKFGYASAKFRQLAQERDGFSRSVTSSSSHGLRERINGVFARKIDWTLLMKMGKEWI QNPMNMALFVWIMCVAISGAILFLVMTGMLDRALPKKSQRDVWFEVNNQILNALSALMCLYQHPKRFYDLVLLCRWNPKDISRLIKIYLKNGTYKPHEWA HMVVVVVAAALLHLNCFAQYALCGLNLGYRRSERPAIGVGICISVAIAAPAAAGVYSILSPLGKDYESEIDEEAQMQISADEQRILETRPQWSGGILDFW DDISIAYLSLFCSFCVFGWNTERLGLGNMYVHILTFLLFCLAPFWIFNMAAVNIDNETVREALGITGIILCALGLLLYGGFWRIQMRKRFNLLAYTFCCG EPAVSDCTLWLCCCWCSLAQEVRTGNSYDIVEDKFCQKQMNCSNKMPLSPFPCRDGSNPSSPLGNNSSPSKFTISNSPSPSTVSKGYNTPSRQLLMVKEE SSRGVKDETLTPPTPSLIEREANSAGKTRIYIAFYFVIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.008G075300 [exp]	0	1
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	3.16	0.9315
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	3.87	0.9274	Pt-THRRS.2
AT1G05910			cell division cycle protein 48...		Potri.017G031400 [exp]	4.00	0.9236
AT1G77260			S-adenosyl-L-methionine-depend...		Potri.002G077100 [exp]	5.65	0.9022
AT3G15890			Protein kinase superfamily pro...		Potri.001G203601 [exp]	7.07	0.8990
AT4G19350		EMB3006	embryo defective 3006 (.1)		Potri.004G235300 [exp]	9.94	0.8940
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.006G096100 [exp]	11.48	0.8809	DEX1.1
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	11.74	0.8792
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.018G137500 [exp]	13.49	0.8874
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.007G060800 [exp]	16.49	0.8856

Compare expression of checked genes

Potri.008G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.