Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ASNAP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56190 360 / 7e-126 ASNAP, ALPHA-SNAP2 alpha-soluble NSF attachment protein 2 (.1.2) AT3G56450 228 / 7e-73 ALPHA-SNAP1 alpha-soluble NSF attachment protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G181900 [exp] 503 / 0 AT3G56190 366 / 3e-128 alpha-soluble NSF attachment protein 2 (.1.2) Potri.016G129900 [exp] 359 / 2e-125 AT3G56190 359 / 2e-125 alpha-soluble NSF attachment protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002410 [exp] 441 / 1e-157 AT3G56190 428 / 1e-152 alpha-soluble NSF attachment protein 2 (.1.2) Lus10032835 [exp] 419 / 2e-148 AT3G56190 385 / 6e-135 alpha-soluble NSF attachment protein 2 (.1.2) Lus10001258 [exp] 338 / 3e-117 AT3G56190 360 / 7e-126 alpha-soluble NSF attachment protein 2 (.1.2) Lus10012211 [exp] 335 / 3e-107 AT3G08840 1101 / 0.0 D-alanine--D-alanine ligase family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF14938 [poplar] [flax] SNAP Soluble NSF attachment protein, SNAP
Representative CDS sequence Show only first row Show all	>Potri.008G075400.1 pacid=42805835 polypeptide=Potri.008G075400.1.p locus=Potri.008G075400 ID=Potri.008G075400.1.v4.1 annot-version=v4.1 ATGGATTTGGCAGCAAAAGGAGACGATTTCGAGAAGAAAGCAGAGAAGAAATTGAACGGTTGGGGTATTTTCGGTTCCAAATATGAAGACGCCGCCGATC TCTTCGACAAAGCTGCCAATAATTTCAAGCTCGCTAAATCCTGGGAAAAAGCTGGATCGACGTATGTCAAGCTGGGACAGTGTCATTTGAAGTTGGATAG CAAACATGAAGCTGCCTCGGCTTATGTTGATGCTGCTCATTGTTACAAGAAAACATCCACTACTGAGGCAATATCTTGCTTAGCTCAGGCTGTAGATATG CTTTGCGATATTGGAAGGATCAGTATGGCTGCAAGATATTTCAAGGAAATTGCTGAGTTGTACGAGTCAGATGCAAATATTGAAAAATCTATGGAATATT ATGATAAGGCTGCTGATTTCTTCCAAAATGAAGATGTAACAACATCTGCCAACCAATGCAAGCAGAAAGTGGCAGAATTTGCTGCTCAGCTCGAACAATA CCAGACTTCAATTGACATTTACGAAGAGATAGCTCGACAATCACTTAAAAATAATTTACTGAAGTATGGAGTCAAAGGTCATCTTCTTAATGCTGGCATT TGCCATCTCTGCAAAGGCGATGTTGTTGCAATTACCAATGCATTAGAGCGATATCAGGAGATGGATCCAACTTTTTCAGGAACTCGTGAATATAAACTGC TTGCGGATATTGCTGCTGCCATTGATGAGGAAGATATTGCAAAATTCACTGATGTTGTCAAGGAATTTGATAGCATGACGCCACTGGATTCCTGGAAGAC AACCCTTCTATTGAGGGTGAAAGAGAAGCTGAAAGCTAAAGAACTAGAGGAGGATGACCTCACCTAA
AA sequence Show only first row Show all	>Potri.008G075400.1 pacid=42805835 polypeptide=Potri.008G075400.1.p locus=Potri.008G075400 ID=Potri.008G075400.1.v4.1 annot-version=v4.1 MDLAAKGDDFEKKAEKKLNGWGIFGSKYEDAADLFDKAANNFKLAKSWEKAGSTYVKLGQCHLKLDSKHEAASAYVDAAHCYKKTSTTEAISCLAQAVDM LCDIGRISMAARYFKEIAELYESDANIEKSMEYYDKAADFFQNEDVTTSANQCKQKVAEFAAQLEQYQTSIDIYEEIARQSLKNNLLKYGVKGHLLNAGI CHLCKGDVVAITNALERYQEMDPTFSGTREYKLLADIAAAIDEEDIAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.008G075400 [exp]	0	1	ASNAP.1
AT3G13410			unknown protein		Potri.001G000900 [exp]	1.00	0.9412
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.012G057300 [exp]	2.00	0.9135
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.006G077900 [exp]	6.70	0.9145	PBA1.2
AT4G15930			Dynein light chain type 1 fami...		Potri.008G219900 [exp]	9.89	0.9046
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Potri.001G138100 [exp]	9.94	0.8967
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G048800 [exp]	10.95	0.8985
AT5G21070			unknown protein		Potri.004G196600 [exp]	11.40	0.9240
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.010G181900 [exp]	12.40	0.8887	ASNAP.3
AT1G33490			unknown protein		Potri.013G095200 [exp]	12.64	0.9041
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.003G128600 [exp]	12.72	0.8855

Compare expression of checked genes

Potri.008G075400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.