Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36170 671 / 0 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT1G56350 256 / 8e-80 Peptide chain release factor 2 (.1) AT3G57190 222 / 1e-67 PrfB3 peptide chain release factor 3, peptide chain release factor, putative (.1) AT3G62910 157 / 6e-43 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT2G47020 144 / 2e-38 Peptide chain release factor 1 (.1.2) AT1G33330 57 / 7e-09 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G045200 [exp] 254 / 5e-80 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.013G009200 [exp] 246 / 4e-76 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.014G133400 [exp] 160 / 3e-44 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.014G114000 [exp] 142 / 9e-38 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.010G181600 [exp] 97 / 7e-25 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3) Potri.002G188200 [exp] 76 / 9e-15 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.019G063800 [exp] 61 / 3e-10 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036446 [exp] 652 / 0 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 632 / 0 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10031411 [exp] 249 / 2e-77 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10010922 [exp] 248 / 1e-76 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10005944 [exp] 155 / 2e-42 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 146 / 6e-39 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10009980 [exp] 141 / 4e-37 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10038039 [exp] 139 / 2e-36 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10008558 [exp] 61 / 8e-10 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03462 [poplar] [flax] PCRF PCRF domain
Representative CDS sequence Show only first row Show all	>Potri.008G075800.1 pacid=42808691 polypeptide=Potri.008G075800.1.p locus=Potri.008G075800 ID=Potri.008G075800.1.v4.1 annot-version=v4.1 ATGGAGGGCATTCTAGTTCGCAATTTATGCAGTATCTCCGGTGCTACTGTGCTTTTAGCACCACCATCAAGACCTTCATTTTTTTTTCAACACAAGGCCT CCTTTTCTCCTTCTAACTCTACCATGTTTCCATTGCTCTCTTCACTATTCTCTGCCCCTTCTCGCTCCTTTTCTTCTGTTATATATGCCACACCAGACAG CCAGTTGAGTGTTGGAGCTGATACGGATACGGATACGGATACGGATACCAGAGAATGGGCAATGCAAGATTTCTATAGCTTAAGGAAGGATGTCGAAACT GCCTCACAGCGTGTTGAAGAGATGAGAGCTTCTTCCGGTCTGCATCTATTAGAACAAGAACTTGCAGATTTGGAATCTAAAGCAGCTGATAGCTCCCTCT GGGATGACCGTGCTAAAGCTCAAGAAACCCTGCTGGCCCTGACCGATGTGAAAGATAAGATAAAGTTGCTAGCAGAATTCAAAACCAAGGTTGAAGAGGC TGAAACTATAGTTAAATTAACAGAGGAGATGGACTCCACAGATGCTGGATTTCTAGAAGAGGCAACTGGGATCATTAAAGAATTAAATAAGGCATTGGAT AAGTATGAGTTGACTCAACTTCTTTCTGGTCCTTATGATAAAGAAGGTGCTGTTCTATCCATCACAGCTGGTGCTGGCGGTACAGATGCACAGGACTGGG CTGACATGCTTCTCAGGATGTATGTGAGATGGGGAGAGAAACAACGATACAAGACAAAGGTGGTTGAAAGTTCACCAGGAGAGGAAGCTGGGATTAAATC AGCCACAGTTGAAGTTGAAGGCCGTTATGCTTATGGCTACCTGTCTGGGGAGAAGGGAACACACAGAATTGTGCGGCAATCTCCTTTTAATTCCAAAGGT CTTCGTCAGACCAGTTTTTCTGGTGTTGAAGTCATGCCTCTACTTCCTGAAGAGTCGATGGACGTGGAACTACCTGAGGAGGACCTGGAAATTAGTACTT CAAGGGCAGGTGGGAAAGGAGGGCAGAATGTAAACAAGGTTGAAACTGCTGTCAGGATAACTCACATTCCCACTGGTGTAACCGTTCGCTGCACAGAAGA GAGATCCCAGCTATCAAACAAGATCAAGGCTCTAAGCCGGTTAAAAGCGAAACTATTGGTCATAGCTGAAGAACAACGAGCATCTGAAATCAAGCAAATA AGGGGAGATGCAGTGAAGGCAGAATGGGGCCAACAGATAAGAAACTATGTATTCCATCCATACAAACTCGTCAAAGACGTCCGGACAGGACATGAGACAT CAGATATTGCTTCTGTAATGGATGGCGAATTGGATCCCTTCATCAGAGCTTACCTCAAGCACAAATACAGTATGACACTATCTGCAAGTGAGCCTAATTG A
AA sequence Show only first row Show all	>Potri.008G075800.1 pacid=42808691 polypeptide=Potri.008G075800.1.p locus=Potri.008G075800 ID=Potri.008G075800.1.v4.1 annot-version=v4.1 MEGILVRNLCSISGATVLLAPPSRPSFFFQHKASFSPSNSTMFPLLSSLFSAPSRSFSSVIYATPDSQLSVGADTDTDTDTDTREWAMQDFYSLRKDVET ASQRVEEMRASSGLHLLEQELADLESKAADSSLWDDRAKAQETLLALTDVKDKIKLLAEFKTKVEEAETIVKLTEEMDSTDAGFLEEATGIIKELNKALD KYELTQLLSGPYDKEGAVLSITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTKVVESSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNSKG LRQTSFSGVEVMPLLPEESMDVELPEEDLEISTSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLSNKIKALSRLKAKLLVIAEEQRASEIKQI RGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIASVMDGELDPFIRAYLKHKYSMTLSASEPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Potri.008G075800 [exp]	0	1
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.012G046300 [exp]	2.44	0.6858
AT2G19180			unknown protein		Potri.018G142900 [exp]	6.92	0.7242
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	10.58	0.6520	TFIIB1.2
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	17.72	0.6897
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Potri.017G086500 [exp]	18.33	0.5856	CGS1.1
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067600 [exp]	22.75	0.6084
AT2G17030			F-box family protein with a do...		Potri.009G140000 [exp]	24.00	0.6507
AT1G16840			unknown protein		Potri.008G005900 [exp]	32.06	0.6630
AT4G30310			FGGY family of carbohydrate ki...		Potri.018G095700 [exp]	33.04	0.6217
AT4G22820			A20/AN1-like zinc finger famil...		Potri.012G130100 [exp]	38.80	0.6547

Compare expression of checked genes

Potri.008G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.