Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DCL903
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03300 1566 / 0 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT5G20320 606 / 0 DCL4, ATDCL4 dicer-like 4 (.1.2) AT1G01040 387 / 8e-111 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G43920 285 / 4e-78 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT4G15417 98 / 5e-22 ATRTL1 RNAse II-like 1 (.1) AT3G20420 86 / 4e-17 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT5G45150 77 / 6e-14 RTL3 RNAse THREE-like protein 3 (.1) AT1G35530 69 / 2e-11 DEAD/DEAH box RNA helicase family protein (.1.2) AT4G15850 47 / 9e-05 ATRH1 RNA helicase 1 (.1) AT3G61240 45 / 0.0004 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G181400 [exp] 2257 / 0 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 684 / 0 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.018G047500 [exp] 648 / 0 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.002G181400 [exp] 380 / 2e-108 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.002G226700 [exp] 105 / 2e-24 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.011G086700 [exp] 94 / 5e-20 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.013G109600 [exp] 61 / 1e-08 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G110200 [exp] 48 / 3e-05 AT1G35530 0 / 1 DEAD/DEAH box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036447 [exp] 1535 / 0 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10016367 [exp] 630 / 0 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019757 [exp] 586 / 0 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10019588 [exp] 482 / 9e-149 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2) Lus10030176 [exp] 365 / 5e-108 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005142 [exp] 365 / 1e-104 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030177 [exp] 303 / 2e-88 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005141 [exp] 150 / 2e-39 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10019587 [exp] 154 / 7e-39 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10040013 [exp] 112 / 4e-26 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0196 [poplar] [flax] DSRM PF03368 [poplar] [flax] Dicer_dimer Dicer dimerisation domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.008G075900.1 pacid=42807961 polypeptide=Potri.008G075900.1.p locus=Potri.008G075900 ID=Potri.008G075900.1.v4.1 annot-version=v4.1 ATGGAGCCTGTTAGCATGGATATAGATACCACCCAACAACTCCCTGCGGATCCTCTCCCATTTGCTAGAAGTTATCAATTGGAGGCTTTGGAGAAGGCGC TAAAGCATAACACAATTGTGTTTTTGGAGACTGGTTCCGGAAAGACTTTGATCGCCATCATGCTACTCCGCAGTTACGCTTATCTTCTTCGCAAGCCTTC ACGTTTTATTGCTGTTTTCCTGGTTCCTCAAGTCGTTCTGGTTCGCCAACAAGCTGGAGCTGTGGAAATGCATACTGATTTGAAAGTGGGCATGTACTGG GGAGAAATGGGAGTTGACTTCTGGAATGCTGCTACATGGAAGAAGGAAATAGAAAAACATGAGGTGCTTGTTATGACACCTCAAATTTTGCTTAACGGCT TGAGGCATAGCTTTTTCAAGCTAGACTTGATCAAGGTGATGATTGTTGATGAATGTCATCATACCAGGGGCAAGCACCCCTATGCAAGCATCATGACAGA GTTCTTTCATTGTGAGTTAAAGTCTGGTCACCATGATCTTCCTAGGATTTTTGGGATGACCGCTTCTCCCATAAAGTCAAAGGGTGCAAACTCAGAATTA TACTACTGGCAGCAGATTCGTGAACTTGAGGATATTATGAATTCAAAGATATATACATGTGTTAGCGAGTCTGCGCTTGCTGAATTTATACCATTCTCAA CCCCAAAGTTCTTATTTTATGAGCACATGAAGATCCCTGACGGTATATTTGCTTCTTTACTTAAAGAATTGGGGAATTTAAGAACAAAGCATGAACACAT GCTCGAGCAATTGGATCTCAATGAGTCCGCAGCAGTATCTATATGCAATAAAATATCAAAAGTACATTCAGCTTTGATGTTTTGTTTGGAGGAACTTGGT GTTTGGTTGGCTTTTCAGGCTGCACAGTTCTTATCACACTGTGATACTGATGGTGACTTTATTTCAGGGGGTAAATTAGATGTGTCTGGTGAGACCATTG TTAAAAACTTTTGCCAGGATGCCTCGTTGGCAATTTCTAATTGCTTTTCAGATGGTCAGGAATGCTCCATTGGGGATAACATTAAGGCTCATTTGGGTGC CGGGCTTTTAACTTCGAAGATTCTCTGCCTTGTTGAGTCACTTCTTCAGTACAGGGATTTAAAGGAAATAAGATGTATAGTTTTTGTGGAAAGGGTCATT ACTGCCATTGTCCTTGAATCTCTATTGAGTAAGTTGCTTCCTAAACATGGCAGCTGGAAGACTAAATACATAGCAGGAAATAATTCAGGGTTGCAATCCC AGACACGCAAAATTCAAAACGAAATTGTGGAAGAATTTCGTAAAGGCATGGTGAACATCATTGTTGCAACATCAATTCTTGAGGAAGGATTAGATGTGCA AAGTTGCAACTTGGTGATTAGATTTGACCCTTCTGCCACTGTCAGCAGCTTTATACAGTCCCGAGGCCGTGCTAGGATGCAGAATTCTGACTACTTATTA ATGGTGAAAAGAGGGGATTTTTCTACACATGCTCGACTAGAGAACTATCTGGCCAGTGGTGACATAATGCGAAGGGAGTCTCTACGCCATGCATCCATTC CTTGTTCACCTTTGCTGGATGAGTTGGATGATGAGTTTTATCGTGTTGAGGGCACCGGGGCAGTTGTCAGTCTATCTTCAAGTGTTAGTTTGATATACTT TTATTGCTCACGTCTTCCTTCTGATGGGTATTTTAAACCAGCTCCCAGGTGTATTATAGACAAGGAGACAATGACTTGTACACTACATCTTCCAAAAAGC TCTCCTGTACAAACTATTTGTGTGCAGGGAAATATTAAAACTTTGAAGCAGAAGGCATGCCTTGAAGCATGCAAGAAACTTCATGTTTCTGGTGCTTTAA CAGACAATCTTGTTCCTGATATTGTTATGGAAGAAGCTGTTGCTGAAGACGTTGGGAATGAGAGGTATGATGATGAACAACCCATTTATTTGCCACCGGA GCTGGTCAGTCGAGGTCCACGAAATTTGAAGACGAAGTACTACTGCTACTTAATTGAGTTGAATCAGAACTTTGCTTATGATATTCCTGTCCATGACGTG GTGCTTGTCGTGAGGACTGAACTTGAATCTGATGTCATAAGGAGCATGGGTTTTGATTTAGAAGCTGAGAGGGGCTTATTGACAGTGAACTTGAGGTATA TTGGAGATATTGATCTTGAACGAGTGCTGGTCCTCTTATGTAGGAGGTTTCAGATTACTCTTTTCAAAGTTCTTTTGGATCATAGTGTAAATAAATTGAA AGAGGTCTTAGAAGGATTAGACTTAGGGTCAGGTGCCGAGATAGACTATTTTCTACTTCCTGCTTTCAGGTCATGCTCACAACCTTCCATCAACTGGGCA CCTATTAGTTCTGTGTTGTTCTCATATAAAAATGAGGAGCACTTCAACTGTTCTCGGAATGGCAATGCTCATGTTGTCCAAACCAAATGTGGTCCAGTTT GCGCATGTGTGCTTCAGAATTCTTTGGTCTGCACCCCCCACAATGGTAACATCTATTGCATCACGGGTGTTTTTGAGGATTTGAATGGAAACTCGCTTTT AAAGATGGGAGATGGAGGGGCTATCACTTACAAAGAGTACTTTGCAAAGCGGCATGGCATCCAATTGCTTTTCAATCGAGAACCATTACTTAAAGGGAAA CATATTTTTCCAGTGCACAATCTTCTTAACAGATGCAGAAAACAAAAGGAGAAAGCATCGAAGAATACACATGTAGAGTTGCCTCCTGAACTTTGTGAAA TAATTTTATCTCCAATATCAATCAGTACTCTTTATTCTTATACATTTATCCCATCAATAATGCATCGACTTGAGTCTCTGCTCATTGCTGTCAACTTAAA GAAGATGCATTCAGATCATTATCTGCAACATGTTAATATTCCATCCATGAAGGTATTGGAAGCAATTACTACAAATAAATGCCAAGAGAATTTTAATTTG GAATCATTAGAAACTCTAGGAGATTCTTTTCTTAAATATGCTGCAAGCCAGCAGCTATTTAAAATTTATCAAAATCATCACGAGGGCCTTCTTAGTTTTA AGAAGGACAAAATTATTTCTAATGCTGCACTTTGCAGAAGAGGATGTAACCACAAACTTCAGGGATTTATCCGCAATGAATCTTTCGATCCAAAACTCTG GATAATTCCTGGTGGCAAGTTGGGTAGTGACTTTTTAAGCGAGGAGCCACTTTCTAAGGGCAGGAAAATTTACATTAGAGGAAGAAGAAAGGTAAAAAGT AAAACAATTGCTGATGTTGTCGAGGCACTCATTGGTGCATACCTCAGTACAGGCGGTGAAGTGACAGCCTTATTATTTATGGATTGGATTGGTATAAAGG TGGATTTCATGAATACACCATATGAGAGGCACATCCAATTGCAGGCAGAGAAGTTTGTTAATGTCCGCTACTTAGAATCACTGTTAAACTATTCATTCAA TGACCCTTCTCTCTTAGTAGAAGCATTGACCCATGGTTCTTACATGCTTCCTGAGATCCCAAGATGTTATCAGCGACTGGAATTTCTTGGAGACGCAGTG CTGGATTATCTCATCACTTTGCATATGTACAAGGAATATCCTGGGATGTCACCAGGACTGTTAACTGACTTGAGGTCTGCTTCTGTAAACAATGACTGTT ATGCACTATCTGCTGTTAAGGTAGGCTTGGACAGACACATTCTTCACGCCTCTCATGACCTTCACAAGCATATCGTCGCCACTGTAAAAAAAATTCAGGA ATTTTCTTTAGAATCAACTTTTGGATGGGAATCTGAGACAGCTTTTCCCAAGGTACTTGGAGATGTTATAGAGTCGTTAGCTGGGGCTATTCTTGTAGAT TCAGGATACAACAAGGAGGTAGTCTTTGAAAGTATAAGGCCACTTTTGGAGCCTTTAATTACTCCCGAGACATTAAGATTGCAACCTGTTAGGGAATTGA ATGAATTATGTCAGAGGCAACACTTTGATTACAAGAAACCCATTGTTTCTCGGAACGGCAGGAATGCTTCTGTTACAATAGAGGTTGAAGCTAATGGTCT GATATTTAAACATACAGCTACAGTTGCAGATAAAACGACAGCCAAAAAACTAGCTTCAAAAGAAGTCTTGAAGGCCCTGAAGGAAAGTAATTTTGCGACT AGTACCGCAAGCAAAGTTGAGTAA
AA sequence Show only first row Show all	>Potri.008G075900.1 pacid=42807961 polypeptide=Potri.008G075900.1.p locus=Potri.008G075900 ID=Potri.008G075900.1.v4.1 annot-version=v4.1 MEPVSMDIDTTQQLPADPLPFARSYQLEALEKALKHNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSRFIAVFLVPQVVLVRQQAGAVEMHTDLKVGMYW GEMGVDFWNAATWKKEIEKHEVLVMTPQILLNGLRHSFFKLDLIKVMIVDECHHTRGKHPYASIMTEFFHCELKSGHHDLPRIFGMTASPIKSKGANSEL YYWQQIRELEDIMNSKIYTCVSESALAEFIPFSTPKFLFYEHMKIPDGIFASLLKELGNLRTKHEHMLEQLDLNESAAVSICNKISKVHSALMFCLEELG VWLAFQAAQFLSHCDTDGDFISGGKLDVSGETIVKNFCQDASLAISNCFSDGQECSIGDNIKAHLGAGLLTSKILCLVESLLQYRDLKEIRCIVFVERVI TAIVLESLLSKLLPKHGSWKTKYIAGNNSGLQSQTRKIQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVSSFIQSRGRARMQNSDYLL MVKRGDFSTHARLENYLASGDIMRRESLRHASIPCSPLLDELDDEFYRVEGTGAVVSLSSSVSLIYFYCSRLPSDGYFKPAPRCIIDKETMTCTLHLPKS SPVQTICVQGNIKTLKQKACLEACKKLHVSGALTDNLVPDIVMEEAVAEDVGNERYDDEQPIYLPPELVSRGPRNLKTKYYCYLIELNQNFAYDIPVHDV VLVVRTELESDVIRSMGFDLEAERGLLTVNLRYIGDIDLERVLVLLCRRFQITLFKVLLDHSVNKLKEVLEGLDLGSGAEIDYFLLPAFRSCSQPSINWA PISSVLFSYKNEEHFNCSRNGNAHVVQTKCGPVCACVLQNSLVCTPHNGNIYCITGVFEDLNGNSLLKMGDGGAITYKEYFAKRHGIQLLFNREPLLKGK HIFPVHNLLNRCRKQKEKASKNTHVELPPELCEIILSPISISTLYSYTFIPSIMHRLESLLIAVNLKKMHSDHYLQHVNIPSMKVLEAITTNKCQENFNL ESLETLGDSFLKYAASQQLFKIYQNHHEGLLSFKKDKIISNAALCRRGCNHKLQGFIRNESFDPKLWIIPGGKLGSDFLSEEPLSKGRKIYIRGRRKVKS KTIADVVEALIGAYLSTGGEVTALLFMDWIGIKVDFMNTPYERHIQLQAEKFVNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAV LDYLITLHMYKEYPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLESTFGWESETAFPKVLGDVIESLAGAILVD SGYNKEVVFESIRPLLEPLITPETLRLQPVRELNELCQRQHFDYKKPIVSRNGRNASVTIEVEANGLIFKHTATVADKTTAKKLASKEVLKALKESNFAT STASKVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.008G075900 [exp]	0	1	DCL903
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	4.24	0.7290
AT4G20310			Peptidase M50 family protein (...		Potri.003G157800 [exp]	4.47	0.7844
AT5G01660			unknown protein		Potri.016G127600 [exp]	10.48	0.7202
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	11.31	0.7724
AT2G32070			Polynucleotidyl transferase, r...		Potri.018G036050 [exp]	14.14	0.7458
AT5G63700			zinc ion binding;DNA binding (...		Potri.001G305900 [exp]	15.90	0.6810
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	16.30	0.7769
AT5G03450			Transducin/WD40 repeat-like su...		Potri.010G228000 [exp]	20.49	0.6831
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Potri.001G366700 [exp]	21.35	0.6804
AT5G45290			RING/U-box superfamily protein...		Potri.006G190500 [exp]	21.56	0.6924

Compare expression of checked genes

Potri.008G075900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.