Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03310 632 / 0 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) AT4G19860 444 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) AT3G03370 56 / 4e-09 unknown protein AT1G27480 53 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G13640 48 / 1e-05 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121000 [exp] 459 / 2e-158 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 449 / 9e-155 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G014400 [exp] 51 / 1e-06 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G171000 [exp] 49 / 7e-06 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.003G063100 [exp] 48 / 1e-05 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026853 [exp] 638 / 0 AT3G03310 574 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Lus10020225 [exp] 519 / 5e-180 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1) Lus10017142 [exp] 440 / 6e-151 AT4G19860 748 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018310 [exp] 439 / 1e-150 AT4G19860 749 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018664 [exp] 56 / 4e-08 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10007728 [exp] 55 / 8e-08 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10019519 [exp] 50 / 4e-06 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10037657 [exp] 49 / 9e-06 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10015639 [exp] 48 / 2e-05 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 46 / 6e-05 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF02450 [poplar] [flax] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G076300.1 pacid=42808821 polypeptide=Potri.008G076300.1.p locus=Potri.008G076300 ID=Potri.008G076300.1.v4.1 annot-version=v4.1 ATGCTACAAGACTTCAGTTTCTGCCCATGTTTCGGAGACCGAAGCTTCGACGATACCGAACCCGATCGTGACCCGGTACTATTGGTTTCCGGAATCGCAG GGTCCATTCTCCATTCAAAGAAGAAGAACGGGTCTGAGACTCGGGTTTGGGTCAGGCTTCTCTTGGCTGATTTGGAGTTCAAGAAGAAAATATGGTCTGT TTATAATCCAAAAACAGGTTATACTGAAGTATTGGACAGTGACACTGAGATTGTAGTCCCTGATGATGATTCTGGGCTATACGCAATTGACATTTTAGAT CCGTCATGGTTTGTGAAACTTATTCATTTGTCGGGGGTTTATCATTTTCATGACATGATTGATATGCTTGTTAAATGTGGATATAAGAAGGGAACCACAT TGTTTGGATATGGTTATGATTTTCGGCAAAGCAACAGAATTGAAAAATCAATGGAAGGTCTTAAAGCAAAGTTGGAAGCTGCCTATAAAGCTTCTGGGGG TAGAAAAGTTAATATAATTTCACATTCCATGGGTGGACTGCTGGTTTCTTGTTTCATTTCACTTCACAAAGATTTGTTTTCCGAGTTTGTGAATAAGTGG ATCTGCATTGCCTGTCCTTTCCAAGGTGCACCGGGTTGCATCAATGACTCTCTCTTAACTGGATTGCAGTTTGTTGATGGTTTCGAGAGTTACTTTTTTG TTTCTAGGTGGACAATGCACCAACTGTTGGTTGAGTGCCCGTCGATCTATGAAATGTTGCCAAATCCAGATTTTAATTGGAAAACAGAACCACAAATTCA AGTTTGGCGAAAGCAATCAAATGATGTGGAAACTCCTGCCAAATTGGAGTCCTTTGGTCCTGTTGAATGTATCACTCTCTTTGAAGAAGCGTTGAAGAAT AACGAGTTAAATTATAATGGAAACACCATAGCGCTACCATTCAACCTCTCTATCCTCAAAAGGGCTGCTGGTACTCGTCAGATTCTCAATAATGTTCAAT TGCCAGAAGGGGTCTCCTTCTATAACATTTATGGGGCATCATTTGACACACCTTTTGATGTCTGCTATGGTACAGAGACATCCCCAGTAGAGGACCTGTC TGAAGTGTGCCATTCAATGCCCCAGTATTCTTATGTGGATGGAGATGGAACTGTTCCCGCTGAATCAGCAAGGGCAGACGGTTTTGTGGCAGTGGAAAGA GTAGGAGTTACTGCTAATCACCGTGGACTGCTGTGTGACAAAACAACATTTCAACTTATCCAGAAATGGTTGGGAGTTGAGCAGAATGTCAGTAAGCATT CAAAGACATCCCAAGTGGCGGATGCTTCTCCATAA
AA sequence Show only first row Show all	>Potri.008G076300.1 pacid=42808821 polypeptide=Potri.008G076300.1.p locus=Potri.008G076300 ID=Potri.008G076300.1.v4.1 annot-version=v4.1 MLQDFSFCPCFGDRSFDDTEPDRDPVLLVSGIAGSILHSKKKNGSETRVWVRLLLADLEFKKKIWSVYNPKTGYTEVLDSDTEIVVPDDDSGLYAIDILD PSWFVKLIHLSGVYHFHDMIDMLVKCGYKKGTTLFGYGYDFRQSNRIEKSMEGLKAKLEAAYKASGGRKVNIISHSMGGLLVSCFISLHKDLFSEFVNKW ICIACPFQGAPGCINDSLLTGLQFVDGFESYFFVSRWTMHQLLVECPSIYEMLPNPDFNWKTEPQIQVWRKQSNDVETPAKLESFGPVECITLFEEALKN NELNYNGNTIALPFNLSILKRAAGTRQILNNVQLPEGVSFYNIYGASFDTPFDVCYGTETSPVEDLSEVCHSMPQYSYVDGDGTVPAESARADGFVAVER VGVTANHRGLLCDKTTFQLIQKWLGVEQNVSKHSKTSQVADASP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Potri.008G076300 [exp]	0	1
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	1.00	0.8072
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.017G032000 [exp]	3.00	0.7848
AT1G13570			F-box/RNI-like superfamily pro...		Potri.008G110400 [exp]	3.74	0.7869
AT4G12230			alpha/beta-Hydrolases superfam...		Potri.001G118000 [exp]	4.58	0.7509
AT4G34100			RING/U-box superfamily protein...		Potri.009G099400 [exp]	4.89	0.7597
AT4G38690			PLC-like phosphodiesterases su...		Potri.009G131600 [exp]	8.36	0.7246
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Potri.011G097500 [exp]	9.48	0.7067
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Potri.017G002000 [exp]	10.95	0.7823	Pt-TEJ.2
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.009G106900 [exp]	12.24	0.6947	OST1.1
AT1G78070			Transducin/WD40 repeat-like su...		Potri.002G094100 [exp]	14.07	0.7258

Compare expression of checked genes

Potri.008G076300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.