Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06990 353 / 5e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G24560 348 / 5e-119 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G58430 347 / 1e-118 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G30310 345 / 5e-118 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G30220 332 / 6e-113 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G31540 325 / 6e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G40250 295 / 4e-98 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45960 283 / 3e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 270 / 1e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G42990 266 / 4e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076700 [exp] 414 / 4e-145 AT1G06990 321 / 2e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 377 / 2e-130 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.005G205100 [exp] 278 / 5e-91 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 275 / 4e-90 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 273 / 2e-89 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 268 / 5e-88 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 266 / 4e-87 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 266 / 1e-86 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 264 / 6e-86 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026406 [exp] 336 / 1e-113 AT1G06990 350 / 4e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 283 / 8e-94 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 275 / 3e-90 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015162 [exp] 265 / 2e-86 AT2G04570 482 / 5e-172 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031520 [exp] 265 / 7e-86 AT2G04570 473 / 3e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 259 / 4e-84 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026405 [exp] 258 / 1e-83 AT2G24560 287 / 7e-95 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10034540 [exp] 258 / 2e-83 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 256 / 6e-83 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003719 [exp] 253 / 1e-81 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.008G076600.1 pacid=42808754 polypeptide=Potri.008G076600.1.p locus=Potri.008G076600 ID=Potri.008G076600.1.v4.1 annot-version=v4.1 ATGGCAAACATGAAGCCCTCTGTTGTACTAGTTTACATTCTGACAATCTTTTTCAATACAGGGAATGCTACAAGGTCGAGATCTTTTTCCAAATTTCCTG CCATTCTCGTCTTCGGCGATTCAACAGTAGATAGCGGTAACAACAATGAAATCGATACATTGTTCAAAGCCAATTTTCGTCCATATGGTAGACTCTACCC AGGTCACACTCCTACTGGGAGATTCTCAGATGGAAGACTGATTACTGATTTTCTAGCCTCTATTCTGAAGATCAAAAACGCTGTCCCTCCATTCTTGAAA CCAGATTTGTCAGATCATGAAATTGCTACGGGTGTTAGCTTTGCATCATCGGGATCAGGATATGATAATGCAACAAATGATGTGTTTCAGGTGATCTCAT TTCCCAAGCAAATCGACATGTTTAGGGATTACACTGCAAGGCTAAGGAGGGTTGTGGGAGAACAAAAGGCTAAGAAGATAATCGGTGCTGCATTGGTTGT TATCAGTACTGGAACTAATGATATATCAACGTTGAGGATGGACAAGAATGATACTGGGTACCAAGATTTTTTGCTGAACAAGGTCCAGTTTTTTACCAAA CAACTGTATGATCTTGGTTGCCGATCCATGATTGTAGCCGGCCTTCCTCCAATCGGTTGCCTTCCCATTCAAATGACCACCAAACAGCAGCCCCCTTCTC GCCGAAGATGTTTGCACAATCAAAATTTATACTCTGTGTCTTATAACCAAAAGCTTGCCAGCATGCTGCCCCTAGTACAGGCAAAGCTTTCAGGAAGCAA AATAGCATACGCGGACATATATGAGCCACTGATGGACATGATCCACCATCCACAAAAATATGGATTTGAGGAAACAAATAAAGGCTGCTGTGGCACTGGA TTTGTGGAGATGGGACCCCTGTGCAATCCAACGACTCCGACATGTCGACATCCTTCTCGCTACTTGTTTTGGGATGCTGTTCATCCCGGCCAATCAACCT ACCAGTATCTTACTAAATACGTAGAGAAGAAAGTTCTGCCCAAATTCTTGTAG
AA sequence Show only first row Show all	>Potri.008G076600.1 pacid=42808754 polypeptide=Potri.008G076600.1.p locus=Potri.008G076600 ID=Potri.008G076600.1.v4.1 annot-version=v4.1 MANMKPSVVLVYILTIFFNTGNATRSRSFSKFPAILVFGDSTVDSGNNNEIDTLFKANFRPYGRLYPGHTPTGRFSDGRLITDFLASILKIKNAVPPFLK PDLSDHEIATGVSFASSGSGYDNATNDVFQVISFPKQIDMFRDYTARLRRVVGEQKAKKIIGAALVVISTGTNDISTLRMDKNDTGYQDFLLNKVQFFTK QLYDLGCRSMIVAGLPPIGCLPIQMTTKQQPPSRRRCLHNQNLYSVSYNQKLASMLPLVQAKLSGSKIAYADIYEPLMDMIHHPQKYGFEETNKGCCGTG FVEMGPLCNPTTPTCRHPSRYLFWDAVHPGQSTYQYLTKYVEKKVLPKFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076600 [exp]	0	1
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.006G126800 [exp]	2.00	0.8385	PAL3,Pt-PAL1.2
AT1G17147			VQ motif-containing protein (....		Potri.001G378300 [exp]	3.31	0.7662
					Potri.018G104801 [exp]	7.74	0.8317
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471400 [exp]	8.36	0.7725	Pt-ARP8.1
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.007G114600 [exp]	8.83	0.7568
AT1G67340			HCP-like superfamily protein w...		Potri.015G096200 [exp]	10.77	0.8248
AT5G13610			Protein of unknown function (D...		Potri.008G045200 [exp]	11.61	0.7788
AT1G64200		VHA-E3	vacuolar H+-ATPase subunit E i...		Potri.016G139800 [exp]	11.83	0.7947
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.014G125600 [exp]	16.49	0.7802
AT5G18460			Protein of Unknown Function (D...		Potri.019G024100 [exp]	17.46	0.8243

Compare expression of checked genes

Potri.008G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.