Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06990 322 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30220 321 / 3e-108 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G30310 315 / 7e-106 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G24560 313 / 3e-105 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G31540 312 / 9e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58430 308 / 3e-103 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G40250 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) AT1G20120 264 / 2e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 255 / 1e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G04570 254 / 3e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076600 [exp] 407 / 1e-142 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 355 / 6e-122 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.005G205100 [exp] 255 / 3e-82 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 246 / 4e-79 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 242 / 2e-77 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 241 / 1e-76 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 241 / 2e-76 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 239 / 2e-76 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 239 / 2e-76 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026406 [exp] 306 / 1e-101 AT1G06990 350 / 4e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 269 / 4e-88 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 258 / 6e-84 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 250 / 1e-80 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 248 / 9e-80 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026405 [exp] 245 / 1e-78 AT2G24560 287 / 7e-95 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10015162 [exp] 239 / 2e-76 AT2G04570 482 / 5e-172 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017278 [exp] 237 / 1e-75 AT1G75900 376 / 5e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003722 [exp] 236 / 2e-75 AT5G42170 298 / 3e-99 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028424 [exp] 236 / 2e-75 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.008G076700.2 pacid=42808745 polypeptide=Potri.008G076700.2.p locus=Potri.008G076700 ID=Potri.008G076700.2.v4.1 annot-version=v4.1 ATGGCAAGAATCAAGATTTATGCTATAGCAGCTTGCGTTTGCGCGATCATTTTCAATACATGTAAAGCTGCAGGACAGGGACCTTTGCCGAAATTTCCTG CCATTCTCATCTTCGGCGACTCAACAGTAGATACAGGCAATAACAATTATATTAATACACTTCTTAAGGCCAACTTTTTCCCATATGGTCAGAACTATCC AGGTCAGAAAGCGACGGGGAGGTTCTCTGATGGAGAATTGATTCCTGATATGTTAGCCTCTGCTCTGAAGATCAAAGAGGCTGTTCCTCCATTCCTGGAT CCGAATTTGTCTGACGCAGAAGTCATTACCGGTGTAAGCTTTGCATCAGCAGGAGCGGGATACGATTACCAAACAAATACCCTTCTAAATGTTATCCCAG TTCCAAAGCAGATTGATATGTTCAGGGATTATATTGCAAGGCTAAAGGGTATTGTAGGCGAAGAAAGGGCTAAACAGATCATTGGTGGTGCCTTTGTTCT TATTAGTGCAGGAAGCAATGATATCTTTACAAGGCCTTTCAACTTGCACTATAGTTTCCAGGATACTATGCTGGATATCGTTCAAAATTTTACTAAAGAG CTGCATGATCTTGGATGCCGCTCCATGGCTGTAGCTGGCCTTCCTCCAGTTGGTTACGCTCCCATCGAAAAAACTATTCAGCTGGCCACTGAACTTCTAC TTCCTGTAGATCTAAAATGGGTGGATAACTTAAATTCATATGCTCAATCTTATAACAAAGAGCTTGTCAAGCTATTGGCCCAAGCACAGACAACGTTTTC AGGGAGCAAAATCGTATATGCCGACGTATATGAGCCACTGGATGACATGGTCAAGAATCCAAAACGATATGGATTTCTGGAAACAAAGAGAGGATGCTGT GGGACTGGACTTTTCGAACTGGGACCCTTGTGCAGACCAACGACCCCAACATGTGGAAAATTATTAGCTTCCAAGTTCTTATTTTGGGATGCTGTTCATC CCAGCACATCAACCTATCGGGTCATCGCTAAGCATATAGAGAAGGAGGTTTTCCCCAAGTTCCTGTAA
AA sequence Show only first row Show all	>Potri.008G076700.2 pacid=42808745 polypeptide=Potri.008G076700.2.p locus=Potri.008G076700 ID=Potri.008G076700.2.v4.1 annot-version=v4.1 MARIKIYAIAACVCAIIFNTCKAAGQGPLPKFPAILIFGDSTVDTGNNNYINTLLKANFFPYGQNYPGQKATGRFSDGELIPDMLASALKIKEAVPPFLD PNLSDAEVITGVSFASAGAGYDYQTNTLLNVIPVPKQIDMFRDYIARLKGIVGEERAKQIIGGAFVLISAGSNDIFTRPFNLHYSFQDTMLDIVQNFTKE LHDLGCRSMAVAGLPPVGYAPIEKTIQLATELLLPVDLKWVDNLNSYAQSYNKELVKLLAQAQTTFSGSKIVYADVYEPLDDMVKNPKRYGFLETKRGCC GTGLFELGPLCRPTTPTCGKLLASKFLFWDAVHPSTSTYRVIAKHIEKEVFPKFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076700 [exp]	0	1
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.015G125501 [exp]	2.23	0.9000
					Potri.010G092950 [exp]	3.00	0.8200
					Potri.017G142966 [exp]	5.29	0.7682
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Potri.010G064000 [exp]	7.48	0.8332	Pt-MYB305.2
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111800 [exp]	12.00	0.8088
					Potri.002G144101 [exp]	12.96	0.7945
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.004G115600 [exp]	13.85	0.8024
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.004G118000 [exp]	19.18	0.7815
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G180200 [exp]	19.74	0.7766
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G180000 [exp]	21.63	0.7731

Compare expression of checked genes

Potri.008G076700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.