Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59470 156 / 1e-46 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) AT3G07500 141 / 2e-41 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT2G43280 109 / 2e-29 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT4G12850 99 / 2e-25 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT4G38180 101 / 4e-24 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT5G18960 79 / 1e-16 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT3G06250 78 / 3e-16 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT4G19990 73 / 2e-14 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT3G22170 68 / 8e-13 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT2G32250 66 / 3e-12 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129500 [exp] 169 / 5e-52 AT3G59470 260 / 9e-88 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.017G029100 [exp] 163 / 2e-49 AT3G59470 323 / 1e-112 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.014G176500 [exp] 152 / 2e-45 AT3G07500 275 / 2e-94 Far-red impaired responsive (FAR1) family protein (.1) Potri.017G029400 [exp] 122 / 6e-34 AT2G43280 319 / 4e-112 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G128900 [exp] 122 / 1e-33 AT3G07500 154 / 2e-46 Far-red impaired responsive (FAR1) family protein (.1) Potri.002G239400 [exp] 117 / 2e-32 AT4G12850 207 / 1e-68 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.014G176600 [exp] 114 / 5e-31 AT4G12850 178 / 5e-57 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.002G239300 [exp] 110 / 6e-29 AT2G43280 130 / 2e-37 Far-red impaired responsive (FAR1) family protein (.1) Potri.005G257600 [exp] 114 / 1e-28 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026854 [exp] 167 / 1e-50 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 163 / 2e-49 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10023134 [exp] 44 / 4e-06 AT3G59470 92 / 1e-24 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026732 [exp] 44 / 2e-05 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G076800.1 pacid=42806134 polypeptide=Potri.008G076800.1.p locus=Potri.008G076800 ID=Potri.008G076800.1.v4.1 annot-version=v4.1 ATGGATTTGGAACATAGTCCTGATGTTCCAAACGAGGATCTAAATAATTCTACAGATGGCAATCCTCAGCATGGTAGTGATGGCACAATCGGTGGAAGTT CTATAGAAGCAACATCTCAACCTGAACAAAGTGATAAAATGACTCCAAATTCCACTGGGGGTTTTGAGTTAACTGTAGTCGAACCATATGTGGGTCAAGA GTTTGAATCGGAAGCAGCTGCACTTGAGTTCTATTGCTCTTATGCCACGCGTACAGGTTTTGTTACTCGAATGAGAGATCACAATTGCTCTCAGCGTGAT GGATCTATCATTTCAAGAACACTAGTTTGTAACAGAGAGGGTTTTCGAAAGTCCGCTGATAAGCCTAGAATGCCATGGTCAAGAAAGCCTCGTGCTGTCA CTAGGGTGGGTTGCAGAGCAAGGGTTTCATTTAGAAAGCAGAGTAATGGGGCTTGGGTTATTAGAAGTTTAGTAAAGGAGCACACTCATCCATTGGCATT GCCCGAGAACCAATCTCCAAAGGCTAGGGGAAATCCCAAGATCTATCAAGTTCCGGCTGATGACAAGAGAGTCCATGAACTGATGCGAGAGCTGATGGTG GAGAAAAAAAGGAATGCTTCCCTCACAGAATTTATACAGCTTTTATTCAATCACATCGAGGAGCACACGCAAGGCTTGTCAGAAAAGATCCAGTGCATAG TAGAAAAGGTGAACAAGATGGAGTCAGAAGGAAAAAAGTCAGGATCTGAGATAATCATGTCATTGTAA
AA sequence Show only first row Show all	>Potri.008G076800.1 pacid=42806134 polypeptide=Potri.008G076800.1.p locus=Potri.008G076800 ID=Potri.008G076800.1.v4.1 annot-version=v4.1 MDLEHSPDVPNEDLNNSTDGNPQHGSDGTIGGSSIEATSQPEQSDKMTPNSTGGFELTVVEPYVGQEFESEAAALEFYCSYATRTGFVTRMRDHNCSQRD GSIISRTLVCNREGFRKSADKPRMPWSRKPRAVTRVGCRARVSFRKQSNGAWVIRSLVKEHTHPLALPENQSPKARGNPKIYQVPADDKRVHELMRELMV EKKRNASLTEFIQLLFNHIEEHTQGLSEKIQCIVEKVNKMESEGKKSGSEIIMSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.008G076800 [exp]	0	1
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Potri.007G129600 [exp]	1.00	0.7426
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.010G137600 [exp]	3.46	0.6806
AT3G21310			Core-2/I-branching beta-1,6-N-...		Potri.001G195900 [exp]	3.46	0.7163
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Potri.011G098400 [exp]	8.06	0.6688
AT5G41560			unknown protein		Potri.001G099200 [exp]	8.94	0.7323
AT4G30330			Small nuclear ribonucleoprotei...		Potri.018G096200 [exp]	11.48	0.7171
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.002G142700 [exp]	12.40	0.6660	BSTCP.2
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Potri.009G059200 [exp]	13.03	0.7155	Pt-TWD1.1
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.014G095400 [exp]	13.41	0.6839
AT1G73820			Ssu72-like family protein (.1)		Potri.015G036600 [exp]	18.00	0.6627

Compare expression of checked genes

Potri.008G076800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.