Plant FIBer expression Database

Potri.008G077000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03305 907 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G180800
[exp]
1375 / 0 AT3G03305 867 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026788
[exp]
947 / 0 AT3G03305 808 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Potri.008G077000.1 pacid=42806697 polypeptide=Potri.008G077000.1.p locus=Potri.008G077000 ID=Potri.008G077000.1.v4.1 annot-version=v4.1
ATGGAAAAAAAACAATATCCAGAGTTCAGGGAGACAGGAATTGTGGTTTTGATGCTGTTATGCATCTTTACCACCATATCCACTTCAGTTTCTATACAAC
AAGAAGAAGGAGGAGCAGAGGAATTGATTTCTTCATCGCCCAGAAAATGGGAAGACAGGGTTATAGAAGTGAAAGGAGGGCCAGAGTCAATTATATGGAT
AGTGCAACTCTCTGATCTTCACTTCAGTGTCCACCATCCTGAAAGAGCCCTTGACTTCAAGAGAATTGTGGGCCCTGCTCTTAAGATGATTAATCCATCT
CTCGTTCTCATCACTGGTGATCTCACAGATGGGAAAAGCAAGGACCTGTTAACAATGAAACAAAATGAAGTTGAGTGGATAGAATACAGGAATGTAATGG
AAGATGTTGCTAGAAGAAGTGGACTAGACAAGAGGATTTTCTATGATCTCAGAGGAAATCATGATAATTTTGGTGTTCCAGAGATTGGTGGTTCGTCTGA
TTTCTTTTCAAATTATAGTATTAATGGGCAGTTCGGAAGAAAAGGAAATCTCAACAGTGTCACGGTTGAGACTGGTGACCGCAAACATCTATTCGTTGGG
TTGGACAGCACAATGTCTGCCGGTGTACGAGGGCCAACTAATCTTTTTGGGCATCCAACTGACCAACTACTGGCTCAAATAGATTCACAGCTATCACAAT
GGGATTCTGAAAAAGGAAAACCTATAACTAAGATATCCTTTGGGCATTTTCCACTTTCATTCTCAGCATTGTCACATTCTCAGAAAAGCTTGAAAGATGT
TTTTCTGAAGCATTCAATATCAGCTTATTTATGTGGGCATCTCCACACAAGGTTTGGTAAGAATTTAAAACGGCATCACCAGTCAAATGAAAACTTTCTG
TCCTCGCATGAGTTTTTTCAGTTAAATATGCACCAAAAACCTTCTGAGAGCGCTAAAAACTGTTCATCTCAAGCACCACCACTTAAGGAGTTCTGGGAGT
GGGAGATGGGTGATTGGAGGAAAAGTAGAGCCATGCGAATTATGGCTGTTGACAGAGGTCATGTTTCATACCTGGACATTGACTTCAAATCAGGAACCAA
AAAAACCATTGTGTTGCCCACATTTCCACTAGACTCCCGCTTCATGTCAACATCTTCATTCCATCAGATGTATGAATGTCAACATATGGTCCCTTTTTCT
TTCGAAACAATCAGATGTATAGTGTTTTCCATTTCTCCAATTATGTCAGTTGTGGCTAGGATCTATGACACAAGACCAGGAAGTCCCCATTTGATCATGG
AGACAACCATGACCAAGATTGTGAGGGATGTATCAAGGGGAGACATTTATGCAGCTGCATGGAATTTTAAAGCCTTTGAGGATCCATCTCCTGATAGATT
TTGGCTGCAAATAGAAGTAACTGATGCAATGGGAAGATCAACTTTGTCTGAACTAAGGCCATTTTCTGTAAATGGTCTAAGTGCTAAGATCTCATGGACA
TGGAAGGAATTTTTTGTCATGGGTTGTCAATGGGCTGCCTTGTACTACCCAATATTCTGGTCTGCTATATATTTAATGTTCTCCATTCTTCTCATTCCAA
AAATTTGCCTCATTTTCTCTAAGGAGCAGTACTCTTACAAGACTTCCATATGTGAAAAGGGTTTAATAAATTGTATAGCATGGGTTCTGCAGGACCTCTG
CAGGATTCCTGTGGTGTGGTTTGGTATTTTAGGATACTTGATCTACCTTATTTCATGTCCCTGGCTTATTGGGCAAGTTTTCACTGATGGTGAGAACAGG
GGGTACATGACCTACACGGGATGGGTTGTGAAAAATTTCAACAACAGTGAAAAACACGAGTATATTGGATCTCCAGATATTATGGTGGTTGTGCTTTCCC
ATTTCTTCTTTGTGGTTATACCTTCTATATTGGTTGCTGGAGCATTTGCTGCTGAAAGAGGTATCTACAAAGAGCATTTCCTATCACTTTCAGGCAAGAA
AGAAGATGATGATTCTAGTCAGAAGAATAAGAGATCAGTAAAGTATGATAACCAAGGACGTAGAATATCTAAATTTCTTTTTGTGGAGAGGTTGTTTCGG
AAAATTCTCTTGGTGGTTTGCTTGGTGATTTGTTGGAAACATTTTATGAATTGCAGAGTTCTCATAAAAGCATATGAAATGAACCCCTTGCTTCACTTTC
CAGTGTATAGCCTTGCAATTCCATTGCTGTTGGCTTATGCCGTGTACAAAACCAGAAGTATTCAATGA
AA sequence
>Potri.008G077000.1 pacid=42806697 polypeptide=Potri.008G077000.1.p locus=Potri.008G077000 ID=Potri.008G077000.1.v4.1 annot-version=v4.1
MEKKQYPEFRETGIVVLMLLCIFTTISTSVSIQQEEGGAEELISSSPRKWEDRVIEVKGGPESIIWIVQLSDLHFSVHHPERALDFKRIVGPALKMINPS
LVLITGDLTDGKSKDLLTMKQNEVEWIEYRNVMEDVARRSGLDKRIFYDLRGNHDNFGVPEIGGSSDFFSNYSINGQFGRKGNLNSVTVETGDRKHLFVG
LDSTMSAGVRGPTNLFGHPTDQLLAQIDSQLSQWDSEKGKPITKISFGHFPLSFSALSHSQKSLKDVFLKHSISAYLCGHLHTRFGKNLKRHHQSNENFL
SSHEFFQLNMHQKPSESAKNCSSQAPPLKEFWEWEMGDWRKSRAMRIMAVDRGHVSYLDIDFKSGTKKTIVLPTFPLDSRFMSTSSFHQMYECQHMVPFS
FETIRCIVFSISPIMSVVARIYDTRPGSPHLIMETTMTKIVRDVSRGDIYAAAWNFKAFEDPSPDRFWLQIEVTDAMGRSTLSELRPFSVNGLSAKISWT
WKEFFVMGCQWAALYYPIFWSAIYLMFSILLIPKICLIFSKEQYSYKTSICEKGLINCIAWVLQDLCRIPVVWFGILGYLIYLISCPWLIGQVFTDGENR
GYMTYTGWVVKNFNNSEKHEYIGSPDIMVVVLSHFFFVVIPSILVAGAFAAERGIYKEHFLSLSGKKEDDDSSQKNKRSVKYDNQGRRISKFLFVERLFR
KILLVVCLVICWKHFMNCRVLIKAYEMNPLLHFPVYSLAIPLLLAYAVYKTRSIQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G03305 Calcineurin-like metallo-phosp... Potri.008G077000
[exp]
0 1
AT3G55010 EMB2818, ATPURM... EMBRYO DEFECTIVE 2818, phospho... Potri.014G123000
[exp]
6.92 0.8355
AT3G12130 C3HZnF KH domain-containing protein /... Potri.006G191900
[exp]
7.93 0.8474
AT3G17830 Molecular chaperone Hsp40/DnaJ... Potri.015G035300
[exp]
8.83 0.8378
AT5G12840 CCAAT NF-YA1, ATHAP2A... "nuclear factor Y, subunit A1"... Potri.001G257600
[exp]
9.89 0.8235
AT4G37020 unknown protein Potri.007G043200
[exp]
12.24 0.8372
AT1G61670 Lung seven transmembrane recep... Potri.006G109000
[exp]
13.63 0.8261
Potri.005G130601
[exp]
18.65 0.7891
AT3G63340 Protein phosphatase 2C family ... Potri.005G214500
[exp]
19.28 0.8146
AT1G65650 UCH2 Peptidase C12, ubiquitin carbo... Potri.004G130400
[exp]
21.49 0.8155
AT3G60800 DHHC-type zinc finger family p... Potri.001G117100
[exp]
28.56 0.8229

Potri.008G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.