Plant FIBer expression Database

Potri.008G077400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G36700 509 / 0 ATPGLP1, 2-PHOSPHOGLYCOLATEPHOSPHATASE1 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
AT5G36790 509 / 0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3)
AT5G47760 374 / 9e-130 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G180400
[exp]
639 / 0 AT5G36700 514 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Potri.016G004200
[exp]
404 / 9e-142 AT5G47760 516 / 0.0 2-phosphoglycolate phosphatase 2 (.1)
Potri.006G003501
[exp]
74 / 9e-17 AT5G47760 96 / 9e-26 2-phosphoglycolate phosphatase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042429
[exp]
520 / 0 AT5G36700 541 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Lus10026241
[exp]
518 / 0 AT5G36700 536 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Lus10039102
[exp]
396 / 3e-138 AT5G47760 497 / 2e-179 2-phosphoglycolate phosphatase 2 (.1)
Lus10038761
[exp]
360 / 2e-124 AT5G47760 439 / 4e-157 2-phosphoglycolate phosphatase 2 (.1)
Lus10033024
[exp]
235 / 2e-76 AT5G47760 288 / 1e-98 2-phosphoglycolate phosphatase 2 (.1)
Lus10038760
[exp]
229 / 2e-74 AT5G47760 305 / 1e-105 2-phosphoglycolate phosphatase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF13242 Hydrolase_like HAD-hyrolase-like
Representative CDS sequence
>Potri.008G077400.3 pacid=42806773 polypeptide=Potri.008G077400.3.p locus=Potri.008G077400 ID=Potri.008G077400.3.v4.1 annot-version=v4.1
ATGCTAAGCAGGACAGTTGTTTCAGTGTCTGCTGTTTCTTCAACCTCTTCAACATCTCTGTCCCGATTTCTGTGCAAAGTAAACCAAACAATCCCTAAAT
TCTTGGGTCAGAAAAAACTCTCCCACAACTTCACAAACTGTACCACATGGAACAAAAACTTGAACTTGAATAGAAAGTGTAGTACAAGAATGGACAATTT
CACGACCAAAGCATCAGCAGCAGCCCAGCCTTTAACAAACGCAGATGAGCTCATTGGGTCTGTTGAGACTTTCATCTTTGATTGTGACGGAGTTATATGG
AAAGGAGATAAATTGATTGATGGAGTCCCTCAAACTCTTGATATGCTCCGCTCAAGAGGGAAGAGACTAGTTTTTGTTACAAACAACTCGACAAAGTCTA
GGAAACAATATGGTAAAAAGTTCGAGTCACTTGGTCTTGATGTCAGTGAGGAAGAGATTTTTGCATCTTCTTTTGCCGCTGCAGCCTATTTGAAGTCAAT
TGATTTCCCAAAAGATAAAAAGGTTTATGTGGTTGGTGAGGATGGCATCTTGAAGGAGCTTGAGCTTGCTGGATTTCAGTATCTTGGTGGGCCAGAAGAT
GGTGGAAAAAAGATTGAGCTGAAGCCTGGGTTTCTGATGGAGCACGATAAAGATGTTGGGGCAGTTGTTGTTGGATTTGATCGCTATTTCAACTACTACA
AAGTCCAATATGGAACACTCTGTATAAGGGAAAATCCTGGGTGTCTCTTCATTGCTACAAATCGTGATGCAGTCACCCATCTTACAGATGCTCAGGAATG
GGCAGGCGGTGGTTCTATGGTCGGTGCTTTTGTTGGTTCAACTCAGCGTGAGCCACTGGTTGTGGGAAAGCCCTCAACTTTTATGATGGATTACTTAGCA
AACAAATTCGGGATTCTCAAGTCACAAATATGCATGGTCGGGGACAGATTGGATACTGATATTCTGTTTGGACAAAACGGTGGTTGCAAAACTCTTCTTG
TACTCTCCGGTGTGACCTCATTGTCGATGCTTCAAAGTCCAAGCAACTCCATCAAACCAGATTTCTACACCAACAAAATTTCTGATTTTCTTTCCCTCAA
AGCTTCAGCTGTCTGA
AA sequence
>Potri.008G077400.3 pacid=42806773 polypeptide=Potri.008G077400.3.p locus=Potri.008G077400 ID=Potri.008G077400.3.v4.1 annot-version=v4.1
MLSRTVVSVSAVSSTSSTSLSRFLCKVNQTIPKFLGQKKLSHNFTNCTTWNKNLNLNRKCSTRMDNFTTKASAAAQPLTNADELIGSVETFIFDCDGVIW
KGDKLIDGVPQTLDMLRSRGKRLVFVTNNSTKSRKQYGKKFESLGLDVSEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPED
GGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLA
NKFGILKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPSNSIKPDFYTNKISDFLSLKASAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G36700 ATPGLP1, 2-PHOS... 2-phosphoglycolate phosphatase... Potri.008G077400
[exp]
0 1
AT1G03130 PSAD-2 photosystem I subunit D-2 (.1) Potri.010G089400
[exp]
2.44 0.9814 PSAD1.1
AT3G63140 CSP41A chloroplast stem-loop binding ... Potri.002G053000
[exp]
4.24 0.9745
AT1G70580 GGT2, AOAT2 GLUTAMATE:GLYOXYLATE AMINOTRAN... Potri.010G045100
[exp]
6.00 0.9733
AT1G79040 PSBR photosystem II subunit R (.1) Potri.011G142200
[exp]
6.92 0.9740
AT4G39970 Haloacid dehalogenase-like hyd... Potri.007G095200
[exp]
7.61 0.9609
AT2G20890 PSB29, THF1 THYLAKOID FORMATION1, photosys... Potri.019G117900
[exp]
9.38 0.9704
AT1G09340 CSP41B, CRB, HI... heteroglycan-interacting prote... Potri.005G010266
[exp]
10.09 0.9656
AT3G23700 Nucleic acid-binding proteins ... Potri.014G148500
[exp]
11.22 0.9707
AT4G12800 PSAL photosystem I subunit l (.1) Potri.014G175600
[exp]
12.64 0.9722 PSAL.2
AT1G42970 GAPB glyceraldehyde-3-phosphate deh... Potri.005G254100
[exp]
12.96 0.9679 Pt-GAPB.2

Potri.008G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.