Plant FIBer expression Database

Potri.008G077800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65470 346 / 2e-106 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G209795
[exp]
861 / 0 AT1G65470 326 / 2e-100 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008729
[exp]
672 / 0 AT1G65470 616 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Lus10004453
[exp]
645 / 0 AT1G65470 632 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Lus10024521
[exp]
642 / 0 AT1G65470 647 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Lus10003491
[exp]
636 / 0 AT1G65470 635 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12253 CAF1A Chromatin assembly factor 1 subunit A
Representative CDS sequence
>Potri.008G077800.1 pacid=42806832 polypeptide=Potri.008G077800.1.p locus=Potri.008G077800 ID=Potri.008G077800.1.v4.1 annot-version=v4.1
ATGGCGGAAGTGGTCAAGATGGCAATCGACTGTGAAGATGAGTCAAAACCGAGCGGCCAAGATCAACCAAAGAAGACCCTGAAGAGGAAGCGAGCAACTT
TAACACCAACACAACAACAGCAACTCGTGAACTTAACAGGTGAACAGAAAGAAGTCCAGATTGAGGAATTGAAGAGAGAAATGGAAGGGCTATTTGGGTA
TTACAAAGAAACGATGAATCAGAAAATGGGTTTTGGGTTTGGTGTAGATTTGGGTGGAAGTGAGTGTATTAATGTGAATGGGATGGTGGGTCTGTTAATG
GAAGAGAGTGACATGTCGTTTTCGAAACTGGTAGAGGAAATATACGGGAAGTTAGTGAAAAAGAGTGGGAATTTGACTGTTGCAGTGGTGAAAAGTGCTG
TGTTGTTTGTTGGTCAAAGAATAACATATGGTGTGCCTAATGTAGATGCTGATGTTTTGGAGGATGAGACTCAAAGTTGTCTTTGGTGCTGGGAGACACG
AGATTTAAAGCTAATGCCGAAATCTGTCCGTGGTGCTTTGAAAATCAGGCGTATGTGCCGAGCAAAGATCCATGAGAGGATTACTGCTGTTTTCGCGATG
ATAACTGCATTACAGAAGTCAGAGACTGATGAAAATTACAAAAGTGATTTAATAAAATCATCAGGGAAGCTTGGCAAAGTTTTAAGAGAGGCAGACATTC
GTTTGTTAGTGGATGGCATGTTACAGAAGAATGGAGCAGATATGGCTGAAAAGCAAGTAAAAAGAGAAGAAAAATTGATCATCAAGCAATTGGAGAAAAA
TAAACGAGAAGAGGAAAAGGAGAAAAAAAGGATGGACCTTGAATTTCAAAAGGAAAAGAGACAAACTGAAAAAGAGCAAAAGCGACTGCAGGAGGAGGCA
GAAAAAGATGAACGGCGTCGTGAAAGGGAAGAGTTTGAAATGAAGAGACAACTGAAAAGGCAGCAAGAGGAAGCTGAGAAGGAACAGCGGCGCAAGGAGA
AGGAAGAAGCTGAGTTGAAAAGGCGAGTTGCTGTACAGAAGCAAGCTTCAATGATGGAACGCTTTCTAAAAAGAAGCAAAAGTAGTTCCCCATGTCAGAA
TGACCAGAGTTTAACTAAAGCAACCACTTCTGATTCCTCAAGCAAAAAGAGTAAAAGGATGGATGAAGCAGTTACTCAGTTAATGGACTGTGCTCCTTTG
TTAAATGATAACATTACAAGTGATGACATTCTCAAGTCACACTTGTCTTCCTGGTGTCATTTGGGTTGCTCTATCCGTTCCAATAGAAAACAGCATTGGA
GTATCCGGAGGAAGCCTAAGACTGGACTGTTTAAGGAACTTAAGCTAACTGCTATCAGGGACCCAACTCATGATGATGATTCAAGTGCAGAGAAGCTTGA
TAGTGGATGGGGAGATCAAACTTCTGATGACATATCGTGCATAGATGTTAGAAAATGCAATCGGAGGAAGCAATTGTTGCAGTTTGATAAGAGCCATAGA
CCTGCTTTTTATGGTATCTGGCCTAAGACAAGTCATGCTGTTGGACCACGCCATCCATTAAGGAGGGATCCAGACTTAGATTATGATGTTGACAGTGATG
AAGAATGGGAAGAGGAGGATCCTGGTGAAAGCCTCTCGGATTGTGATAAGGATGATGGAGAAGAAAGTTTAGAGGAAGAATATTCAAAAGCTGATGATGA
AGAAGAGAGTGAAGATGGTTTTTTTGTACCTGATGGGTATCTCTCAGAAAATGAGGGAGTACAACCTCACAGAATGGATGCTGATCCTTCAGTCGAGGAG
GCCAGAAGCTCGCCTAGTTGCAAGCAAGACTTAGAGAGCGAGGAGTTCTGTACATTGCTGAAACAGCAGAAATGTCTGAACAGTTTAACTGATAATGCCC
TTCGGAAAAATCATCCCATGATTGTATTGAATATAATGCATGAGAAGGATGCGTTGTTAGTGGCTGATGACCTAAGTGACATTTCTAAAGTGGAAAAAAT
GTGTTTGCAAGCACTTAGCATGCGAGCATTCCCTGGAGGACCACAAATGGAGATGTTCTTGGATGTGTCATCTGAAAATCATGATGCTTGCTTGTTAAAT
GCAAAGGCCAGTGCTACACGTATCCCAGCTGTGATAACTTTACAAGACTCGGATATGCCTATAGTTGTGTCTGTTATTCAGTCATGCTCGCAAAGTATGA
ATAAAGTGGTTGAATCACTGCAACAGAAATTCCCCACTGTCTCAAAGTTGCAATTAAGAAACAAAGTTCGTGAGATATCAGATTTTGTGGATAATCGTTG
GCAGGTCAAGAAAGAAGTTTTGGATGGTTTTGGCATTATAAGTTCGCCAGAAAAGAGCAGAGGAAGGAAGCATAACATTTCTACATTTTTCTCCAAGAGG
TGCCTGCCTCCTGCTGGTAAAAGCACGAATCCTAATGAGTCCTCACCGCCTATGCTGAAACATGGTTCTGTTGCTGAGAGCCAACAAATTTGCACATACA
GCCATCCATAG
AA sequence
>Potri.008G077800.1 pacid=42806832 polypeptide=Potri.008G077800.1.p locus=Potri.008G077800 ID=Potri.008G077800.1.v4.1 annot-version=v4.1
MAEVVKMAIDCEDESKPSGQDQPKKTLKRKRATLTPTQQQQLVNLTGEQKEVQIEELKREMEGLFGYYKETMNQKMGFGFGVDLGGSECINVNGMVGLLM
EESDMSFSKLVEEIYGKLVKKSGNLTVAVVKSAVLFVGQRITYGVPNVDADVLEDETQSCLWCWETRDLKLMPKSVRGALKIRRMCRAKIHERITAVFAM
ITALQKSETDENYKSDLIKSSGKLGKVLREADIRLLVDGMLQKNGADMAEKQVKREEKLIIKQLEKNKREEEKEKKRMDLEFQKEKRQTEKEQKRLQEEA
EKDERRREREEFEMKRQLKRQQEEAEKEQRRKEKEEAELKRRVAVQKQASMMERFLKRSKSSSPCQNDQSLTKATTSDSSSKKSKRMDEAVTQLMDCAPL
LNDNITSDDILKSHLSSWCHLGCSIRSNRKQHWSIRRKPKTGLFKELKLTAIRDPTHDDDSSAEKLDSGWGDQTSDDISCIDVRKCNRRKQLLQFDKSHR
PAFYGIWPKTSHAVGPRHPLRRDPDLDYDVDSDEEWEEEDPGESLSDCDKDDGEESLEEEYSKADDEEESEDGFFVPDGYLSENEGVQPHRMDADPSVEE
ARSSPSCKQDLESEEFCTLLKQQKCLNSLTDNALRKNHPMIVLNIMHEKDALLVADDLSDISKVEKMCLQALSMRAFPGGPQMEMFLDVSSENHDACLLN
AKASATRIPAVITLQDSDMPIVVSVIQSCSQSMNKVVESLQQKFPTVSKLQLRNKVREISDFVDNRWQVKKEVLDGFGIISSPEKSRGRKHNISTFFSKR
CLPPAGKSTNPNESSPPMLKHGSVAESQQICTYSHP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G65470 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.008G077800
[exp]
0 1
AT3G06130 Heavy metal transport/detoxifi... Potri.013G025300
[exp]
2.64 0.8807
AT1G65470 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.002G209795
[exp]
2.82 0.8913
AT4G36520 Chaperone DnaJ-domain superfam... Potri.007G022600
[exp]
3.16 0.8946
AT5G67100 ICU2 INCURVATA2, DNA-directed DNA p... Potri.007G045300
[exp]
5.19 0.8714
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.015G130701
[exp]
5.74 0.8936
AT2G45590 Protein kinase superfamily pro... Potri.014G072900
[exp]
6.24 0.8605
AT3G07610 IBM1 increase in bonsai methylation... Potri.005G082901
[exp]
8.36 0.8553
AT1G65920 Regulator of chromosome conden... Potri.017G139600
[exp]
9.00 0.8233
AT1G21980 ATPIPK1, ATPIP5... phosphatidylinositol-4-phospha... Potri.005G172800
[exp]
10.95 0.8278 Pt-PIP5.1
AT2G32910 DCD (Development and Cell Deat... Potri.005G042700
[exp]
12.00 0.8621

Potri.008G077800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.