Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16260 485 / 2e-167 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G50300 55 / 6e-08 TAF15 TBP-associated factor 15 (.1) AT4G36690 52 / 1e-06 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) AT5G08695 49 / 6e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60900 47 / 4e-05 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT3G47120 43 / 0.0005 C3HZnF RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G179000 [exp] 823 / 0 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G170700 [exp] 56 / 6e-08 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.008G085400 [exp] 50 / 3e-06 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026858 [exp] 534 / 0 AT5G16260 566 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10020230 [exp] 482 / 8e-166 AT5G16260 508 / 8e-177 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012902 [exp] 57 / 2e-08 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10030555 [exp] 55 / 8e-08 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10037299 [exp] 48 / 2e-05 AT1G60900 629 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10018227 [exp] 47 / 3e-05 AT3G47120 298 / 1e-99 RNA recognition motif (RRM)-containing protein (.1) Lus10035713 [exp] 47 / 6e-05 AT1G60900 640 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.008G078200.4 pacid=42807287 polypeptide=Potri.008G078200.4.p locus=Potri.008G078200 ID=Potri.008G078200.4.v4.1 annot-version=v4.1 ATGTCGTCTATGAAGGATTTTGCCATGGATCACCAAACCCAGCAGCAGCAGCCATACTCTGGTGCAGGAAACGGCCATGATGGCAGCTACAACAGGGTTG CGGAAGTTGGATGGTTTATTCTAGGTGAAGATCAACAACAGGTTGGACCTTATACGTTTTCTGAGCTAAGTGAGCACTTCCTGAACGGGTATCTCGTAGA AAGTACACTGGTATGGTCTGAAGGAAGAAGTGAATGGCAGCCACTGTCCTCATTCCCTGAGTTCACGTCAGGAATATCTCAACAGGGATCTGATTATTCC ACAGCAGCACTTGCTTACAATGATAAGGAGGTCGAGAAGTTGCAGGAGTCCAGAGAGGCTGAATTGGAATTTGTTGGATTGAGAAATGGATCTCATTCTA GCAATGAACAGAAAGCCAAGCATTCTACTTTAGTGTCACCCAACACTGATGAGGATGAGTTTGAGAAATGGAAAAGGGAGGTAGAAGAGGCTGAGGCTGA GGCAGAAAGGCTGAAAAATGGATCTCTTTCTGGCAACACTGGAGATGATCTTGGGATAGACGATCCTGACAGGGTTCTATCACCACCAGATGGCGAGGAT GAATTCACAGATGATGATGGGACTACATACAAGTGGGATGGAAGCCTAAGAGCCTGGGTTCCTCAGGATAATCCTTCAAGTGTAAGTGGGCGATTTGGAG TAGAAGAGATGACTTTCCATGAACAAGAGGAGGTGTTTCTAAATGTAAACGCTGCTGATGCCACTTTGAAGGAAGAATTCAATGTTACTGATGAAGTGGT AGGATCACAGCTTAATAACAAGAGGAAATTGCGTGACAAGCAAGCGGACAAGAAGGATGAGCAAGCTGATAAAAAGGAAGCCAATAAGGCTCCTGATAGT TGGTTTGAATTGAAAGTCAATACACACGTTTATGTAACTGGGTTGCCTGACGATGTCACTGCTGAAGAAGTGGTAGAGGTATTTTCCAAATGTGGGATAA TTAAGGAGGATCCTGAAACAAAAAAGCCCCGAGTGAAGATTTATGTTGACAAAGAGACAAGAAGAGTAAAGGGAGATGCTCTAGTTACATATTTGAAGGA ACCCTCTGTAGATTTGGCTGTGCAAATTTTGGATGGGACACCATTGCGTCCTGGGGGCACAATTCCTATGTCAGTCAGCCAAGCCAAGTTTGAACAGAGA GGGGACAGATTTATATCCAAACAAATTGACAGCAAGAAGAAAAGGAAGCTGAAAAAGGTTGAGGACAGGATCCTTGGTTGGGGTGGCCGTGATGATGCCA AGGTGTCAATTCCAGCTACTGTAGTTCTTCGCCACTTGTTCACTCTTTCTGAAATGAGGGCTGATGAAAGCTTAGGTTCAGAACTCGAGGTAGATGTTAG AGAGGAATGTGTGAAGCTTGGTCCAATAGATTCCATCAAGGTCTGTGAGAATAATCCACACGGTGTTGTTTTAGTGAGATTTAAGGACAGAAATGACGCT CGAAGGTGCATAGAATTGATGAATGGACGATGGTTTGGCGGAAGAGAGATACATGCTAGTGAGGATGATGGGCTAATTAATCATGCTTCGGTCCGGGATC TTGATGAGGATGCTGCTCGCTTAGAGCAGTTTGGTGCTGAACTTGAAGCTGGCTGA
AA sequence Show only first row Show all	>Potri.008G078200.4 pacid=42807287 polypeptide=Potri.008G078200.4.p locus=Potri.008G078200 ID=Potri.008G078200.4.v4.1 annot-version=v4.1 MSSMKDFAMDHQTQQQQPYSGAGNGHDGSYNRVAEVGWFILGEDQQQVGPYTFSELSEHFLNGYLVESTLVWSEGRSEWQPLSSFPEFTSGISQQGSDYS TAALAYNDKEVEKLQESREAELEFVGLRNGSHSSNEQKAKHSTLVSPNTDEDEFEKWKREVEEAEAEAERLKNGSLSGNTGDDLGIDDPDRVLSPPDGED EFTDDDGTTYKWDGSLRAWVPQDNPSSVSGRFGVEEMTFHEQEEVFLNVNAADATLKEEFNVTDEVVGSQLNNKRKLRDKQADKKDEQADKKEANKAPDS WFELKVNTHVYVTGLPDDVTAEEVVEVFSKCGIIKEDPETKKPRVKIYVDKETRRVKGDALVTYLKEPSVDLAVQILDGTPLRPGGTIPMSVSQAKFEQR GDRFISKQIDSKKKRKLKKVEDRILGWGGRDDAKVSIPATVVLRHLFTLSEMRADESLGSELEVDVREECVKLGPIDSIKVCENNPHGVVLVRFKDRNDA RRCIELMNGRWFGGREIHASEDDGLINHASVRDLDEDAARLEQFGAELEAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Potri.008G078200 [exp]	0	1
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.005G173200 [exp]	12.96	0.6520
AT2G14680		MEE13	maternal effect embryo arrest ...		Potri.001G292800 [exp]	13.41	0.6447
AT3G03010			Peptidyl-tRNA hydrolase II (PT...		Potri.013G082850 [exp]	14.28	0.6462
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.005G158300 [exp]	14.49	0.6160
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040400 [exp]	15.09	0.6650
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	15.49	0.5992
					Potri.016G130201 [exp]	26.07	0.6074
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Potri.015G020800 [exp]	26.26	0.6435
AT1G35470			SPla/RYanodine receptor (SPRY)...		Potri.019G080800 [exp]	29.56	0.5857
AT1G76460			RNA-binding (RRM/RBD/RNP motif...		Potri.002G004600 [exp]	30.01	0.6122

Compare expression of checked genes

Potri.008G078200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.