Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16270 407 / 1e-123 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT3G59550 152 / 1e-37 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G40840 126 / 2e-29 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) AT5G05490 105 / 8e-23 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) AT4G05360 47 / 7e-05 Zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178600 [exp] 1828 / 0 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.001G225600 [exp] 170 / 4e-43 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Potri.017G067400 [exp] 138 / 5e-33 AT5G40840 218 / 6e-60 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Potri.008G072300 [exp] 59 / 2e-08 AT5G05490 428 / 1e-142 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026862 [exp] 867 / 0 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020235 [exp] 841 / 0 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020233 [exp] 590 / 0 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10023028 [exp] 154 / 3e-38 AT5G16270 327 / 2e-101 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10037478 [exp] 153 / 8e-38 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Lus10022338 [exp] 118 / 1e-26 AT5G40840 179 / 1e-46 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10041587 [exp] 116 / 5e-26 AT5G40840 181 / 2e-47 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0157 [poplar] [flax] Kleisin PF04824 [poplar] [flax] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Potri.008G078500.4 pacid=42808179 polypeptide=Potri.008G078500.4.p locus=Potri.008G078500 ID=Potri.008G078500.4.v4.1 annot-version=v4.1 ATGTTTTATTCACAGTTTATTTTGGCCAAGAAAGGGCCTTTGGGTACAATTTGGATAGCTGCTCATCTGGAGAGGAAGCTTCGGAAGAATCAGGTCGCTG ATACTGATATTGGTGTCTCTGTAGATTCAATTCTTTTTCCCGACGTACCAATTGCACTGAGATTGTCTAGTCATCTTTTGCTTGGTGTGGTGAGGATATA TTCTAGAAAGGTGAGTTACCTTTTTGATGATTGCAGTGAGGCTTTGCTCAAGGTAAAGCAAGCTTTCCGCTCCACTGCTGTTGATTTACCACCAGAAGAA TCAACTGCCCCATATCACTCCATCACCTTGCCAGAGACTTTTGATCTTGATGATTTTGAGCTTCCAGACAATGATATTTTTCAAGGCAACTATGTTGATC ATCACATTAGTACAAGGGAGCAGATTACCCTCCAAGACACAATGGATGGTGTTGTCTACTCCACATCACAATTTGGATTGGATGAGCGGTTTGGTGACGG TGACACTTCTCATGTTGATTTGGACCTTGAAGAGGACCTGTTCCTAGACAAGGTTGCAGCTCCAAGGTCTGATGAAGTTTCAGAGCTGAGTCTTCAGACG TCTGCTGAATCATTGGAACCAAAAGTAGAGGAAGATCATGACGTGATTGGAACTGCAGAAGCCATGCCAGTGAATGGTACTAGAAACAAGATGGTAAGTC AAGCTTCAAATTCTGAATCTCTGGACTATGCTCAGGCTCCTTCCACTCCTGGGTTAGTAGAAGAGCCAAACTTGTCCAGTGTTCAGGATGGTCTAGCCTG TGATGATCATTTAAAATCAGAAGATAACAAGTTGACCGATGGCATAGAGAGCACTGGAAATGCTTCCAGTAAGCCAAATCATCACAGGGATGACACAATG AATTTGTCTTTGGGCAATCATTTAAACTGTGATACTGTTGTGTGCATACCTGCTGAGGAGAATGGCTGCCTTTCTGGTGATTTGGAAATCAATCAAGCAG AGTCACCAGGAGAGTTACTATCTACCACAGTGAATATAGATTATTTAGCAGCAGATGGGATGGTTTGTGCATTAGATGGATCAGACAATGTAGAAGTGAT AAATAACTTTGTCTGCAATGGTGAGGTCACTGTGCCCTCTGTCGATAAAATCAATGGGGAGTGCAGAGAATCCACAGGAGTCAGGTTACATGAACCAGAT AATCTCGAAATTGCTAATGCTGTGGAAGACTTGAGCTCACTTGGAAAAGCTGTAGATGCGAATACTGGCTGTCCATTGGAATTGGCTGGTGCCCCAGAGG GTGATGCTCAGGCTCACCAAGGGCCAGAGGATCCTGATTCTTTGAGCAAAGATGTTGATGGAGAAAAGACACACAATAGCATGGGTGTGCTCCGTGCATG CAATTCCTACATGAGTGGACCTGATTCATCATTTCATGGGATTAATAATGATGATTTTCAGCTTCCACCTGAAACACAAGGTCATGCACCATGTTCATTG GAGATGTCCAGCGGGGAGGAAGCATTCCATGCTTCTGGAATTTCCACTAAGGTGCAAGGTGAAAAATGCCATGCGACTGATGTTATACAATCAGTGGAAA ATCAGATATCTGAACTCAATTTACCTGGAGAAATTCAAGCAGATGGTGGGAAGCAAGACGAGCAACCAGACAATACATTCCCTAGTGATAATCAGTTGGA GAACTTGAATAGTTCCTTGACTTCTGAATTGCCTACACCTGAAAAGTTGCTTTCTGTACCTCAAGGGCTTCTTGATAAGCCAAATGATTTGCTGGTTGAG TCAACTCCAGTCGAAGAAATCGTAGATGGGGGTGACAGAAGCAGTGCTGGAACCAACATTACTGGAAAAAAGCGTAGTTTTACAGAAAGTTCACTAACTG TGCAGAGTTTAAATTCAGTTGATTCTTTTGGTGTCTCTAGATCAAAGAGAACCGTGGATTCCATTCCTGATGATGATGACTTGCTATCTTCTATATTAGT TGGAAGAAGATCTTCAGTTCTGAAAGTGAAAACTACTCCACCTGCACCTGAAGTGGCATCCATGAAACGTGCCCGGTCTGCATCTCGTCCTAGTGCCATG AAGAGGAAGGTGCTTATGGATGATTCAATGGTCTTGCATGGCGATACTATACGCCAACAGTTAACTAATACTGAAGACATACGTCGCATACGAAAGAAAG CTCCGTGCACACGCACTGAGATTTTAATGATTCAGAGACAATCCTTAGATGAAGAAATTTTCAGTGAACCAGTATTGACCGGTATGTCGGCAGAGCTGAC ATGTTTGCACAGTGAAACATTTGATTTGAGCAGAATAGAGATAGATGACAGTGATGATAACAATGCTTCTGTAGTGGCAAAGGATTCTAGTAGACCAGCT GTTGCTCAAGTTAATGAATTGGAAGCAAGCACCGAGCCTGTTATTTGCAGAAAAGATGTTGATGGACAACCTGCTGAGAATCTCATTTGGACCGAGAAGC AAGGGCAAATGAGTGCTATTGTCGATGTTTCTGATTACAGATCTTCAGAACATGGAATATTGGGGGAAATAACTGAAATGGAAGTTGATAAAGGGCATGT GGAAGTCACAGATGCTGCAAACCACACTGCTATTCTGCATTTTGATGGATCGCACACTGAACTGATTTCTGGAGATGCTGGTGACATGGTGGATGGGTTG GCTCTCATGGATGGCTTTACTGGCACAGATGGTTCTCTGCAGATGGATACTTCAATTCTGCCATCGGATATGATGGATACTCAAGTATTTGGGGAGGTTG ATTTAAGGGATGTGAGTGATGGCAAAACACTAGATGACATTGAAGTTTTAAAACATCATAAACAAAATATTGTTGCAGTTGAAACTGAATCAAGGGAATG GGAACTTTTGTTGGAAGAAAGCAAAGCTGGCGCACCAGCAGAAATCAGAGTAGATTTTCAGGCTGATGGTTCTGCACCTGCTGATGATGCAGACACATTG CTTGCAAATATATCTTCAGAGATTGGTGGATGCATTAACCTCACTTCTGTAAATGTTGACCGAACTCAGGATGATGTTGAAAATGACAAGCTAGGGGATG GTAATGAAGATGGGGGCCTAGCCATGAGCTCAGGGCATGTTGATAAGGACCGAGATTCTAATCATATATGTAATGAAGAATTAATGATGAACCCTACATT TCCTGTAGGATCTGATACGGACTTCAAAAATGCTTCTCTAAATGGTGGAGATTATCCTGTTTCTCGAGAAGCTGATCCACAGAGAATTGTGGATGCTGAA ATAACTTATGCTGACCATCCTGCTCAGTTAGCAAACAGGGAAGTCACAAAGTATGACGCACAAGATCTTCAAGATGTTGCATTTGCAAATGATACAGAAT TTTTGAATGTAGATGATGATGAGATGGGTGGAAATGATGATGATGGCATACCAGGTCCTGAAGATGTTCGCCTTCTTGACAATAGTGGATGGTCTTCCCG CACCAGAGCTGTTGCCAAGTACCTTCAGACTATATTTGATAATGAAGGTGGAAATGGAAGGAAGGTCATTTCAGTGGACAACCTTCTGGCTGGTAAAACT CGGAAGGAGGCATCAAGAATGTTCTTTGAAACTTTGGTTCTTAAAACAAGGGATTACATCCATGTAGACCAGTTAAAGCCCTTTGACAGCATCAGTGTAA AGCCACGAGCAAAGCTCATGAAATCAGACTTCTGA
AA sequence Show only first row Show all	>Potri.008G078500.4 pacid=42808179 polypeptide=Potri.008G078500.4.p locus=Potri.008G078500 ID=Potri.008G078500.4.v4.1 annot-version=v4.1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVSYLFDDCSEALLKVKQAFRSTAVDLPPEE STAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHISTREQITLQDTMDGVVYSTSQFGLDERFGDGDTSHVDLDLEEDLFLDKVAAPRSDEVSELSLQT SAESLEPKVEEDHDVIGTAEAMPVNGTRNKMVSQASNSESLDYAQAPSTPGLVEEPNLSSVQDGLACDDHLKSEDNKLTDGIESTGNASSKPNHHRDDTM NLSLGNHLNCDTVVCIPAEENGCLSGDLEINQAESPGELLSTTVNIDYLAADGMVCALDGSDNVEVINNFVCNGEVTVPSVDKINGECRESTGVRLHEPD NLEIANAVEDLSSLGKAVDANTGCPLELAGAPEGDAQAHQGPEDPDSLSKDVDGEKTHNSMGVLRACNSYMSGPDSSFHGINNDDFQLPPETQGHAPCSL EMSSGEEAFHASGISTKVQGEKCHATDVIQSVENQISELNLPGEIQADGGKQDEQPDNTFPSDNQLENLNSSLTSELPTPEKLLSVPQGLLDKPNDLLVE STPVEEIVDGGDRSSAGTNITGKKRSFTESSLTVQSLNSVDSFGVSRSKRTVDSIPDDDDLLSSILVGRRSSVLKVKTTPPAPEVASMKRARSASRPSAM KRKVLMDDSMVLHGDTIRQQLTNTEDIRRIRKKAPCTRTEILMIQRQSLDEEIFSEPVLTGMSAELTCLHSETFDLSRIEIDDSDDNNASVVAKDSSRPA VAQVNELEASTEPVICRKDVDGQPAENLIWTEKQGQMSAIVDVSDYRSSEHGILGEITEMEVDKGHVEVTDAANHTAILHFDGSHTELISGDAGDMVDGL ALMDGFTGTDGSLQMDTSILPSDMMDTQVFGEVDLRDVSDGKTLDDIEVLKHHKQNIVAVETESREWELLLEESKAGAPAEIRVDFQADGSAPADDADTL LANISSEIGGCINLTSVNVDRTQDDVENDKLGDGNEDGGLAMSSGHVDKDRDSNHICNEELMMNPTFPVGSDTDFKNASLNGGDYPVSREADPQRIVDAE ITYADHPAQLANREVTKYDAQDLQDVAFANDTEFLNVDDDEMGGNDDDGIPGPEDVRLLDNSGWSSRTRAVAKYLQTIFDNEGGNGRKVISVDNLLAGKT RKEASRMFFETLVLKTRDYIHVDQLKPFDSISVKPRAKLMKSDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	0	1
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	1.73	0.9216
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	1.73	0.9229	CPC902,TTN8.3
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	2.00	0.9201
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	2.23	0.9162
AT3G49490			unknown protein		Potri.012G007000 [exp]	3.00	0.9099
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	3.16	0.9217
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	3.46	0.9160	Pt-FHY3.2
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	4.89	0.9135
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	4.89	0.9082
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	6.48	0.9157

Compare expression of checked genes

Potri.008G078500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.