Plant FIBer expression Database

Potri.008G078600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65540 916 / 0 LETM1-like protein (.1)
AT3G59820 858 / 0 LETM1-like protein (.1.2)
AT5G06220 49 / 2e-05 LETM1-like protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G178400
[exp]
1163 / 0 AT1G65540 889 / 0.0 LETM1-like protein (.1)
Potri.007G142000
[exp]
897 / 0 AT3G59820 840 / 0.0 LETM1-like protein (.1.2)
Potri.001G187100
[exp]
57 / 5e-08 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2)
Potri.005G138000
[exp]
42 / 0.0006 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025602
[exp]
856 / 0 AT3G59820 917 / 0.0 LETM1-like protein (.1.2)
Lus10027069
[exp]
854 / 0 AT3G59820 917 / 0.0 LETM1-like protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07766 LETM1 LETM1-like protein
Representative CDS sequence
>Potri.008G078600.1 pacid=42808397 polypeptide=Potri.008G078600.1.p locus=Potri.008G078600 ID=Potri.008G078600.1.v4.1 annot-version=v4.1
ATGGCTTCGAGAGCAATCTTGCGGAGAAAGGGATCCCTCTTTGATTCCTTGAGTGAACCGAATTACTTGATTCGGGTTTTTTCGAGTTTCAAGTATGGGC
TAGGACTGCCTCAATTAAATGACTCGCAAGAATTGAGATGGGTTACCAGTCATCCGTTTGCGAATACTGATAGTAGAATTGAAGGTGGTTTGTCATCAGC
AGCAGGGTTTCTTAGGCGTAATTCTTTTGGTTTAGGTCATGGAATTAGAAATGGAGATTTTGTTTCTTCCTTGGGGATTGGGTGTTATTCACAGTCTTTA
CGTTATGCTTCAATAGCAACTGCTGGTAAACCTGAATATGGGCATGGTAACAATAGAAATGAACAGCAGGCTACCAAACAGGTGAAGGAAGCTTCGCCGG
AGGAGTGTGATGAAGCTGTTGAAGATTTGACTGAGGTTAAAGCCAAGGCTAAGGCTAAGCAGGTGCGAGAGTCCCAAAAGAGTGCTAAAACAGTAATGCA
GAAAATATGGGCTAAGCTTTTGGGTATTGGCCCTGCTTTGAGAGCCATTGCTTCTATGAGCAGGGAAGACTGGGCTAAGAAGCTTCATCATTGGAAGGAT
GAATTTAAGTCTACATTGCAGCACTATTGGTTGGGTACAAAACTACTTTGGGCTGATGTTAGGATTGGTTCGAGGTTACTGGTGAAACTTGCCAATGGGA
AGGGTCTTTCAAGAAGGGAAAGACAACAACTAACACGCACTACTGCCGACATATTTAGGCTGGTCCCTTTCGCTGTTTTCATCATAGTTCCATTCATGGA
GTTTTTGCTGCCAGTATTCCTAAAACTATTTCCAAACATGTTGCCATCAACCTTCCAGGACAGGATGAAGGAACAGGAGGCATTAAAAAGAAAACTAAAT
GCAAGAATTGAATACGCAAAGTTTCTTCAAGACACAGTGAAAGAAATGGCAAAAGAAGTCCAGACCTCTCGAAGTGGAGAAGCAAAGCAGACAGCGGAAG
ATCTTGATGAGTTTATGAACAAGGTTAGAACAGGTTCCCGTGTTTCCAATGAAGAAATTTTAGGCTTTGCCAAGTTATTCAATGATGAGCTTACTTTGGA
TAACATTAGCAGGCCTCGGTTAGTAAACATGTGTAAGTATATGGGTATCAGCCCATATGGAACAGATGCATATCTACGTTATATGCTTCGGAGAAGACTG
CAAGAGATCAAGAGTGATGATAAGATGATTCAAGCTGAGGGTGTGGAGTCCCTTTCTGAAGCTGAACTCCGTCAAGCATGTAGAGACCGAGGCTTGCTTG
GATTGCTTTCTGTGGAGGAAATGCGGCAACAGTTGCATGATTGGCTGGATTTGTCTCTCAATCGCTCTGTCCCATCCTCTCTGTTGATATTGTCCAGAGC
CTTCTCTATTTCTGGAAAAGTTAGGCCTGAGGAAGCTGTCCAGGCTACACTCTCATCTCTTCCGGACGAGGTTGTGGATACTGTTGGAGTTACAGCCCTG
CCATCTGAAGATTCAGTTTCAGAAAGGAGAAGAAAGTTGGAGTACCTAGAAATGCAAGAAGAACTGATCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGC
AGGCCAAGATGAAGGAATCTGTTAGTAGTCAAAAGGATGTGGCTTTGGAAGAGATGAGTATTCCAACAGCTAGAGATGCACGAGAACAGGCAAAAGCAAA
AACATTGGAGAAACATGAGCAGCTTTGTGAACTCAGCCGTGCATTGGCTGTATTAGCTTCTGCATCTTCTGTGAGCAGGGAGCGTGAAGAGTTCCTGCGC
CTTGTCAAAAAGGAGATAGACTTGTATAACAATATGGTGGATAAAGAAGGCACCGAAGGTGAGGAAGAAGCTAAGAAGGCATACAAAGCTGCCAGAGAGG
AGAGTGATCAAGCTGCTGAGACAGCTATCTCTGACAAAATTTCTTCAGCCCTGATCAATAGAGTAGATGCCATGCTCCAAAAGCTTGAAAAGGAAATTGA
CGATGTTGATGCCAAAATTGGAGATCGATGGCGCCTGCTTGATAGGGATTATGATGGGAAAGTGACTCCTGAGGAGGTTGCATCTGCTGCTATGTACCTC
AAGGACCACCTGGGAAAGGAGGGGATCCAAGAGCTCATAAGCAATCTTTCCAAAGACAGAGAAGGAAAGATTCTTGTGGAAGATATCGTCAGATTAGGCA
GTGAAATGAAAGATGCTGATGCAGCAGCGGAGGAAGGAAAATCATAG
AA sequence
>Potri.008G078600.1 pacid=42808397 polypeptide=Potri.008G078600.1.p locus=Potri.008G078600 ID=Potri.008G078600.1.v4.1 annot-version=v4.1
MASRAILRRKGSLFDSLSEPNYLIRVFSSFKYGLGLPQLNDSQELRWVTSHPFANTDSRIEGGLSSAAGFLRRNSFGLGHGIRNGDFVSSLGIGCYSQSL
RYASIATAGKPEYGHGNNRNEQQATKQVKEASPEECDEAVEDLTEVKAKAKAKQVRESQKSAKTVMQKIWAKLLGIGPALRAIASMSREDWAKKLHHWKD
EFKSTLQHYWLGTKLLWADVRIGSRLLVKLANGKGLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDRMKEQEALKRKLN
ARIEYAKFLQDTVKEMAKEVQTSRSGEAKQTAEDLDEFMNKVRTGSRVSNEEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPYGTDAYLRYMLRRRL
QEIKSDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLHDWLDLSLNRSVPSSLLILSRAFSISGKVRPEEAVQATLSSLPDEVVDTVGVTAL
PSEDSVSERRRKLEYLEMQEELIKEEEEEEEEEQAKMKESVSSQKDVALEEMSIPTARDAREQAKAKTLEKHEQLCELSRALAVLASASSVSREREEFLR
LVKKEIDLYNNMVDKEGTEGEEEAKKAYKAAREESDQAAETAISDKISSALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVASAAMYL
KDHLGKEGIQELISNLSKDREGKILVEDIVRLGSEMKDADAAAEEGKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G65540 LETM1-like protein (.1) Potri.008G078600
[exp]
0 1
AT3G03140 Tudor/PWWP/MBT superfamily pro... Potri.013G081400
[exp]
1.00 0.8334
AT5G13590 unknown protein Potri.010G213800
[exp]
7.07 0.7819
AT4G19440 Tetratricopeptide repeat (TPR)... Potri.003G105700
[exp]
10.67 0.8045
AT3G19190 ATATG2 autophagy 2 (.1) Potri.009G102900
[exp]
17.77 0.7970
AT5G19400 SMG7 Telomerase activating protein ... Potri.001G275400
[exp]
18.76 0.7578
AT5G64390 HEN4 HUA ENHANCER 4, RNA-binding KH... Potri.017G042500
[exp]
20.85 0.7978
AT4G03080 BSL1 BRI1 suppressor 1 (BSU1)-like ... Potri.014G135800
[exp]
22.36 0.7245 PP1.6
AT4G23000 Calcineurin-like metallo-phosp... Potri.014G034400
[exp]
24.49 0.7555
AT2G15900 Phox-associated domain;Phox-li... Potri.009G108300
[exp]
31.46 0.7703
AT3G52140 tetratricopeptide repeat (TPR)... Potri.001G271200
[exp]
32.44 0.7654

Potri.008G078600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.