Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16290 664 / 0 VAT1 VALINE-TOLERANT 1 (.1.2) AT2G31810 641 / 0 ACT domain-containing small subunit of acetolactate synthase protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178200 [exp] 870 / 0 AT5G16290 652 / 0.0 VALINE-TOLERANT 1 (.1.2) Potri.007G142300 [exp] 656 / 0 AT2G31810 668 / 0.0 ACT domain-containing small subunit of acetolactate synthase protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025595 [exp] 642 / 0 AT2G31810 701 / 0.0 ACT domain-containing small subunit of acetolactate synthase protein (.1.2.3) Lus10027061 [exp] 639 / 0 AT2G31810 696 / 0.0 ACT domain-containing small subunit of acetolactate synthase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain CL0070 [poplar] [flax] ACT PF10369 [poplar] [flax] ALS_ss_C Small subunit of acetolactate synthase CL0070 [poplar] [flax] ACT PF13710 [poplar] [flax] ACT_5 ACT domain
Representative CDS sequence Show only first row Show all	>Potri.008G078800.1 pacid=42808189 polypeptide=Potri.008G078800.1.p locus=Potri.008G078800 ID=Potri.008G078800.1.v4.1 annot-version=v4.1 ATGGCGGCTTCTGTCCCACAGTGCTCCACTCGAATTACAACTCAAACCCCATGTTCCAAACTGGATTCTGTTGGTGGGTTTTCAAGGAAAAGCTCTGGTT TTGTACATTTTTTAAGGCCCTCTGTTTGGAAGAGTAACAATGCTGTTAAGGTCTCCTGTTCCATTAGCAAAGAAAATGGAAGTGCAGTGTCTGTTGCTGA TTCTGTGCCTACTGTGACTCGCTCCAGGTTGCAACGGCACACGATTTCAGTGTTTGTAGGTGATGAAAGTGGAATAATAAACCGGATTGCTGGGGTTTTT GCTAGAAGAGGCTACAACATTGAATCCCTTGCTGTTGGTTTGAACAAGGATAAGGCTCTCTTTACCATAGTTGTCTGTGGAACTGAAAAAGTTTTGCGGC AAGTTGTAGAACAGCTTAACAAGCTCGTGAATGTCATTAAGGTGGATGATATCTCCAGGGAACCACAAGTAGAACGTGAATTGATGCTCATAAAATTCAA TGCAGATCCAAGTACTCGTGCTGAGGTCATGTGGTTAGTGGACATTTTCAGAGCAAAAATTGTTGATATCTCAGAGAATTCACTTACTATTGAGGTCACC GGTGACCCTGGGAAGATGGCTGCTATTCAAAGGAACCTAAGCAAGTTTGGAATTAAAGAACTTGCAAGAACTGGAAAGATTGCTTTGAGACGGGAAAGAA TGGGCGAGACTGCTCCATTTTGGAATTTTTCTGCAGCTTCGTATCCTGATCTTGAGAGGGTTCCATCTGGGGTAGCTCTTGCCAGGAATTCTACTAAAAC TGTTGCAGGGAATGCAAACCTATCACTTAATGGCAGCAACTCTTCATCCTCAAAGGGTGATGTCTATCCTGTGGAGCCTTATGATGACTTCTTGATGAAT CCAGTTCTTGATGCTCATTGGGGTGTTCTTTACGATGAAGATTCAAATGGACTTAGGTCACACACTTTATCTATGCTTGTGAATAACTGTCCCGGAGTAC TCAACATTGTCACTGGGGTTATATCTCGAAGAGGCTATAACATTCAGAGTCTTGCTGTGGGGCCTGCTGAAGAAGAGGGACTTTCTCGCATTACTACTGT TATCCCTGGAACAGACGAGTCAATTGGCAAGTTGGTCCAGCAACTTCACAAGTTAATAGATCTACATGAGGTTCGGGATATCACTCACTCACCATTTGCA GAACGAGAATTAATGCTGATTAAGATAGCTGCAAATAGTGCTGCTAGGAGGGATGTCCTTGATATTGCTAGAATATTTCGGGCCAAAGCTGTTGATGTCT CTGATCACACAATTACTCTCGAGCTTACAGGTGATTTTAATAAGATGGTTGCACTGCAGAGAATATTGGAGCCATATGGGATTTGTGAGGTGGCACGGAC CGGGAGAGTAGCATTGGTGCGAGAGTCAGGCGTGGATTCCACGTACCTACGTGGATTTCCTCTTCCACTGTAA
AA sequence Show only first row Show all	>Potri.008G078800.1 pacid=42808189 polypeptide=Potri.008G078800.1.p locus=Potri.008G078800 ID=Potri.008G078800.1.v4.1 annot-version=v4.1 MAASVPQCSTRITTQTPCSKLDSVGGFSRKSSGFVHFLRPSVWKSNNAVKVSCSISKENGSAVSVADSVPTVTRSRLQRHTISVFVGDESGIINRIAGVF ARRGYNIESLAVGLNKDKALFTIVVCGTEKVLRQVVEQLNKLVNVIKVDDISREPQVERELMLIKFNADPSTRAEVMWLVDIFRAKIVDISENSLTIEVT GDPGKMAAIQRNLSKFGIKELARTGKIALRRERMGETAPFWNFSAASYPDLERVPSGVALARNSTKTVAGNANLSLNGSNSSSSKGDVYPVEPYDDFLMN PVLDAHWGVLYDEDSNGLRSHTLSMLVNNCPGVLNIVTGVISRRGYNIQSLAVGPAEEEGLSRITTVIPGTDESIGKLVQQLHKLIDLHEVRDITHSPFA ERELMLIKIAANSAARRDVLDIARIFRAKAVDVSDHTITLELTGDFNKMVALQRILEPYGICEVARTGRVALVRESGVDSTYLRGFPLPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.008G078800 [exp]	0	1
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.017G128900 [exp]	4.47	0.8154	Pt-MYB.42,MYB181
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Potri.016G038200 [exp]	5.47	0.7768	CBL.1
AT5G17760			P-loop containing nucleoside t...		Potri.005G119900 [exp]	12.12	0.7577
AT2G19940			oxidoreductases, acting on the...		Potri.004G145700 [exp]	12.40	0.7276
AT5G17760			P-loop containing nucleoside t...		Potri.007G020800 [exp]	14.28	0.7459
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	14.49	0.7398
AT2G38185			RING/U-box superfamily protein...		Potri.006G100400 [exp]	14.83	0.7514
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.008G120050 [exp]	15.49	0.7250
AT1G48910		YUC10	YUCCA 10, Flavin-containing mo...		Potri.002G207400 [exp]	16.88	0.7491
AT5G53880			unknown protein		Potri.011G117001 [exp]	22.44	0.7424

Compare expression of checked genes

Potri.008G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.