Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65580 1475 / 0 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT2G43900 1312 / 0 Endonuclease/exonuclease/phosphatase family protein (.1) AT1G05630 1274 / 0 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G31830 1185 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT4G18010 143 / 2e-35 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT2G01900 139 / 4e-35 DNAse I-like superfamily protein (.1) AT2G37440 139 / 1e-34 DNAse I-like superfamily protein (.1.2) AT1G71710 140 / 4e-34 DNAse I-like superfamily protein (.1.2) AT3G63240 138 / 5e-34 DNAse I-like superfamily protein (.1) AT5G04980 131 / 3e-32 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177400 [exp] 1946 / 0 AT1G65580 1490 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.007G145100 [exp] 1321 / 0 AT2G43900 1511 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Potri.017G006900 [exp] 1301 / 0 AT1G05630 1508 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.015G032200 [exp] 148 / 9e-38 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 147 / 2e-37 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.003G088300 [exp] 145 / 1e-35 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.001G145900 [exp] 143 / 4e-35 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.010G101700 [exp] 135 / 2e-33 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G078000 [exp] 135 / 6e-33 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041607 [exp] 1593 / 0 AT1G65580 1398 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10008330 [exp] 1223 / 0 AT2G43900 1477 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10027073 [exp] 1191 / 0 AT2G43900 1455 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024113 [exp] 813 / 0 AT1G65580 672 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024112 [exp] 802 / 0 AT1G65580 733 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10011041 [exp] 145 / 5e-36 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 139 / 7e-34 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10006597 [exp] 132 / 4e-33 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10028697 [exp] 137 / 6e-33 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10039352 [exp] 133 / 8e-32 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.008G079300.1 pacid=42805992 polypeptide=Potri.008G079300.1.p locus=Potri.008G079300 ID=Potri.008G079300.1.v4.1 annot-version=v4.1 ATGGACGACGTTTTTTTCTCCCTTCACTCTGCATCTCCTCGAACCAACAGCGATGATGCTTCTTCGTCCTCACCTCCGCTCCGAACACCAAAGATCTTCG ACCGTTACTTTTCTTCCTCCTCCTCACCATCCTCCTCCTCCGACGATGATCTACAGCCCTCCAATCCCAATCCCTCCCTGGAAGCCTCCACTAAACGCCT GGATTACATGATCCAGTTCCTCGACCGAAAACTCTCCAATAACAACTGTAATAATAGCTCTAACAACAACGAAAGTGTTTCCCACAGACACAAAACTCCG GCTCTACCAGAATTCATTGGCAAAGGAGGGGGAACCGGGATTTTCCGTATCCCAGTTCGAGCCGCGGTTCACCCAGACCGTCCACCCAGTCTTGAAATTC GGTCACATCCGCTGAGAGAATCTCAAACCGGTCGGTTTTTGAGAACGATTGTAACTACCGAGACGCAAGTATGGGGTGGGAGAGAAAACGGCGCCGTTCA GGTCTGGGAATTGAAGGAAATGTACGGCGGGAGTGATGAAACGGCGCCGTTCAAGGAGTCTGTGGCGTTGAATTCGGGTTCGGGCGTTACGTGTTTGGTT GGTGATGAAGGGAGTCGAGTTGTTTGGAGTGGACATAGAGATGGTAGAATTCGGTGTTGGAAAATGGATACGGGTCCAGGGTTGGACCGAAGTCGTGTCA AGGAGGTCTTGTCTTGGATGGCACATCGCGGGCCAGTCATGACCATGATCTTGACTTGTTATGGGGATTTGTGGTCGGGATCAGAAGGGGGGGTTATTAA GATATGGCCCTGGGAAGATCTGGAAAAGGCCTTTTCATTTACCGCAGAAGAGAGGCATATGGCTGCACTGTCAGTGGAGAGGTCATATATTGATATAAGG AACCAAGTGACCATGAATGGATTCAGCAATGTATTGAATTCCGACGTTAGATACTTGCTTTCTGATAATTCCAGGGCTAAAGTCTGGAGTGCTGGGTTCC TGTCGTTCGCATTGTGGGATGCACACACTAGGGAGTTGCTGAAAATGTTCAATATAGATGGTCAGATTGAAAGACTGGACATGTTGTCAGGACAGGACTT AACCTTTGAAGATGATATCAAGATGAAAATTGTTGCTGGTTCAAAGAAAGAGAAAATGCAAACTTCATTCGGTTTCTTTCAGCGTTCACGTAATGCTATA ATGGGAGCAGCTGATGCTGTTCGTCGAGTTGCTGTAAAAGGTGGATTTGGAGATGATAATAGGAGAACAGAAGCGGTAATTATAACAACAGATGGAATGA TTTGGACTGGGTGTGCAAATGGCTCGCTTGTGCAATGGGATGGAAATGGCAATCGTTTGCAAGATTTCCAGTATCATCCTGTTGCTGTTCAGTGCTTGTG TACATTTGGTTTGCAAATATGGGTTGGTTATGCAAGTGGCACTGTTCAGGTGTTAGACCTTGAGGGTAATCTGGTTGGAGGATGGGTGGCTCACAGCAGT CAAGTAATAAAAATGGCTGTTGGGGGTGGCTATGTTTTCACCCTGGCTAATCATGGCGGTATACGTGGATGGAATGTCATGTCTCCAGGACCCCTTGATG GCATACTGCGTTCAGAGTTAGCTGGAAAAGAATTTTTGTATACAAGGATAGAGAATTTAAAAATATTGGCTGGTACATGGAATGTAGCACAAGGAAGAGC TTCGCAAGACTCACTTGTGTCCTGGTTAGGTTCTGCTGCTGGGGACATTGGCATTGTTGTTGTTGGGTTGCAAGAAGTTGAGATGGGTGCTGGTGTTCTT GCAATGTCTGCAGCTAAGGAAACTGTTGGACTGGAGGGCAGTTCTGCTGGGCAGTGGTGGCTGGATATGATTGGCAAAACATTGGATGAAGGGTCAACAT TTGAACGTGTTGGTTCTCGGCAGCTAGCAGGCTTGCTGATTGCTATGTGGGTTAGAAATAATCTTAAAGCTCATGTCGGGGATGTTGATGCTGCTGCAGT TCCATGTGGCTTTGGGCGTGCAATTGGTAATAAGGGTGCTGTTGGTTTGAGGATTAGGGTATATGATCGGGTAATGTGCTTCATTAATTGTCACTTTGCA GCACATTTAGAAGCGGTCAATCGTCGCAATGCTGATTTTGACCATGTATATCGGACAATGACCTTTGGCCGACCATCTAACTTCTTCAATGCTGCAGCCG CTGGCACTTTATCTGCAGTCCAAAATCCCTTGCGTCCAGAAGGAATACCCGAGTTATCAGAGGCAGACATGGTCATATTTCTTGGCGATTTTAATTATCG GCTTGATGGTATATCTTATGACGAAGCAAGGGATTTTGTGTCTCAGAGAAGCTTTGATTGGCTTAGAGAAAAGGACCAACTCCGAACAGAAATGGGAGTT GGAAAAGTGTTCCAAGGAATGCGCGAAGCAGTTATTAGATTTCCTCCCACATACAAGTTTGAAAAGCACCAACCTGGTTTAGCAGGGTATGATTCAGGTG AAAAGAAGCGCATCCCTGCCTGGTGTGACAGGGTACTATATCGTGATAGCCGGTCAGCCCATGTATCTGAATGCTGCTTAGACTGTCCTGTTGTTTCTTT GATATCCCAGTACGATGCTTGCATGGATGTAACCGACAGCGATCACAAGCCTGTTCGTTGCATATTCAGTGTTGATATTGCACGAGTTGATGAGTCAGTG AGGAGACAAGAGTTTGGAGACATTATGAAATCAAATGAGGAAATTAGATACATAATTGATGAACTAAGCAAGATTCCAGAAACTATTGTCAGCACAAACA ACATAATCCTTCCAAACCAGGATACAACAATTTTGCGTATCACAAATAAATGTGGGGAAAATGATGCTTTGTTCGAAATTATTTGTGAAGGCCAGTCTAT AATTGATGAGAATGGACAAGCATCAGATCATCATCCAAGAGGTTCCTATGGCTTTCCGCAATGGCTTGAGGTCACTCCAGCAGCTGGTATAATTAAACCA GGCCATATTGCCGAGGTGTCAATTCATCTTGAAGATTTCCCCACTTTGGAAGTTTTTCTTGATGGTGTCCCTCAAAATTCATGGTGTGAAGACACCAGAG ACAAGGAAGCTATATTGGTGGTGAAAGTTCGTGGAACTTGCAACACAAATGAGACAAGAAACCACCGGATACGTGTGCGCCACTGCTGTTCATCGCAAAC AGCACAACTTGACCCAAGACCGAATGGCTCGGAGCAAATCCAAGGAAATCTTCTTCACCGGGCTGATTACCAACATCTTAGCAGTTCCTATGATGTGGTC AGCCACCTGCGTAACTTGCGTAGTCCATAA
AA sequence Show only first row Show all	>Potri.008G079300.1 pacid=42805992 polypeptide=Potri.008G079300.1.p locus=Potri.008G079300 ID=Potri.008G079300.1.v4.1 annot-version=v4.1 MDDVFFSLHSASPRTNSDDASSSSPPLRTPKIFDRYFSSSSSPSSSSDDDLQPSNPNPSLEASTKRLDYMIQFLDRKLSNNNCNNSSNNNESVSHRHKTP ALPEFIGKGGGTGIFRIPVRAAVHPDRPPSLEIRSHPLRESQTGRFLRTIVTTETQVWGGRENGAVQVWELKEMYGGSDETAPFKESVALNSGSGVTCLV GDEGSRVVWSGHRDGRIRCWKMDTGPGLDRSRVKEVLSWMAHRGPVMTMILTCYGDLWSGSEGGVIKIWPWEDLEKAFSFTAEERHMAALSVERSYIDIR NQVTMNGFSNVLNSDVRYLLSDNSRAKVWSAGFLSFALWDAHTRELLKMFNIDGQIERLDMLSGQDLTFEDDIKMKIVAGSKKEKMQTSFGFFQRSRNAI MGAADAVRRVAVKGGFGDDNRRTEAVIITTDGMIWTGCANGSLVQWDGNGNRLQDFQYHPVAVQCLCTFGLQIWVGYASGTVQVLDLEGNLVGGWVAHSS QVIKMAVGGGYVFTLANHGGIRGWNVMSPGPLDGILRSELAGKEFLYTRIENLKILAGTWNVAQGRASQDSLVSWLGSAAGDIGIVVVGLQEVEMGAGVL AMSAAKETVGLEGSSAGQWWLDMIGKTLDEGSTFERVGSRQLAGLLIAMWVRNNLKAHVGDVDAAAVPCGFGRAIGNKGAVGLRIRVYDRVMCFINCHFA AHLEAVNRRNADFDHVYRTMTFGRPSNFFNAAAAGTLSAVQNPLRPEGIPELSEADMVIFLGDFNYRLDGISYDEARDFVSQRSFDWLREKDQLRTEMGV GKVFQGMREAVIRFPPTYKFEKHQPGLAGYDSGEKKRIPAWCDRVLYRDSRSAHVSECCLDCPVVSLISQYDACMDVTDSDHKPVRCIFSVDIARVDESV RRQEFGDIMKSNEEIRYIIDELSKIPETIVSTNNIILPNQDTTILRITNKCGENDALFEIICEGQSIIDENGQASDHHPRGSYGFPQWLEVTPAAGIIKP GHIAEVSIHLEDFPTLEVFLDGVPQNSWCEDTRDKEAILVVKVRGTCNTNETRNHRIRVRHCCSSQTAQLDPRPNGSEQIQGNLLHRADYQHLSSSYDVV SHLRNLRSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.008G079300 [exp]	0	1
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.012G081500 [exp]	2.23	0.7671
AT1G30650	WRKY	ATWRKY14, AR411...	WRKY DNA-binding protein 14 (....		Potri.001G460600 [exp]	5.19	0.7501	Pt-WRKY14.2
AT5G05790	MYB		Duplicated homeodomain-like su...		Potri.008G064200 [exp]	6.78	0.6997
AT5G08450			unknown protein		Potri.018G145546 [exp]	7.48	0.7743
AT3G62900			CW-type Zinc Finger (.1)		Potri.002G209409 [exp]	8.18	0.7847
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	8.48	0.7845
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	8.66	0.7326
AT5G53060			RNA-binding KH domain-containi...		Potri.012G017200 [exp]	9.74	0.7293
AT5G63700			zinc ion binding;DNA binding (...		Potri.001G305900 [exp]	13.19	0.7157
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G222500 [exp]	13.41	0.7000

Compare expression of checked genes

Potri.008G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.