Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65590 781 / 0 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1) AT3G55260 531 / 0 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) AT1G05590 225 / 2e-66 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G211000 [exp] 559 / 0 AT3G55260 815 / 0.0 beta-hexosaminidase 1 (.1) Potri.001G232800 [exp] 223 / 1e-65 AT1G05590 796 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.001G232600 [exp] 221 / 4e-65 AT1G05590 798 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.008G049801 [exp] 90 / 1e-21 AT3G55260 108 / 6e-29 beta-hexosaminidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022251 [exp] 567 / 0 AT1G65590 564 / 0.0 beta-hexosaminidase 3 (.1) Lus10003292 [exp] 506 / 6e-175 AT3G55260 781 / 0.0 beta-hexosaminidase 1 (.1) Lus10030323 [exp] 496 / 8e-171 AT3G55260 772 / 0.0 beta-hexosaminidase 1 (.1) Lus10030348 [exp] 214 / 2e-62 AT1G05590 748 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10007899 [exp] 213 / 1e-61 AT1G05590 746 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10013092 [exp] 61 / 3e-10 AT1G65590 81 / 1e-17 beta-hexosaminidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00728 [poplar] [flax] Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain CL0546 [poplar] [flax] Hexosaminidase PF14845 [poplar] [flax] Glycohydro_20b2 beta-acetyl hexosaminidase like
Representative CDS sequence Show only first row Show all	>Potri.008G079400.2 pacid=42808566 polypeptide=Potri.008G079400.2.p locus=Potri.008G079400 ID=Potri.008G079400.2.v4.1 annot-version=v4.1 ATGGGGTTGAAAAGTGCTTGGTTAGTGGTGGTGTTTATGTTTCTTGGGGTTGCTGTGGCAAAGAATGTGAATGAGTTGAATTTATGGCCAATGCCGAAGT GGGTGAGTAGAGGGCACAGCAGGGTTTACATGAGTCAAGATTTTCAGTTAGTTACTGATGGGAGCAAGTACATTGATGGCTCTGAGATTTTGAAGGATGG CTTTACAAGAATGCTTGATGTAGTGAAAGTTGCTCATGTTGTTGATGGTGATCTTTCTAGCGTAGACAAGTCTCTCATCATTAAAGGAATTCATGTTCTT ATTTTCTCACCAGATGACCAGTTACAATATGGTGTTGCCGAGTCATACAAACTGCTGGTTCCTTCACCAGAGATGCCAGATTACGTCCATCTTGAGGCGC AGACTGTTTATGGGGCGTTACATGGGCTTCAGACATTCAGCCAATTGTGTCATTTTAACTTTACAACTAGACTGATTGAAGTTCACATGGTCCCTTGGAC TATCATTGATCAACCAAGATTCTCTTATCGAGGGCTCTTGATTGATACATCAAGACACTATCAGCCAGTGCCAATGATTAAGAAAGTAATTGATTCTATG GCCTATGCAAAATTGAATGTGTTGCACTGGCACATTGTAGATACCCAATCTTTCCCTTTGGAGATACCTTCATATCCACATCTGTGGGATGGGGCTTATT CAGTTTCAGAGCGGTACACCTTTTCTGATGCTGCTGAAATTGTGAGTTATGCTCAAAGGCGAGGAATTAATGTATTAGCTGAACTTGATGTTCCTGGACA TGCTCTCTCATGGGGGCATGGCTATCCTTCTCTATGGCCATCAAAAGACTGTCAGCAGCCACTTGATGTCAGCAACGAGTTTACATTCAAAGTGATAGAT GGGATTCTTTCAGATTTCAGTAAGATCTTTAAATTCAAGTTTGTTCACTTGGGAGGTGATGAAGTTGACCCAAGTTGCTGGACAAAAACTCCCCACATAA CAAAATGGTTAAAAGAGCATAGAATGAATGGATCTCAAGCTTATCAGTACTTTGTCTTGCGGGCACAGAAAATAGCTTTGTCCCATGGATTTGAAATTGT TAACTGGGAGGAGACCTTCAATGACTTCAGAAATAAATTGAGCCGGAAGACAGTGGTGCACAATTGGCTTGGAGGTGGAGTTGCTGAGCAAGTGGTTGCA TCTGGGTTGAGGTGCATTGTGAGCAACCAGGACAAATGGTATCTAGATCACTTGGATACTCCTTGGGAAGAGTTCTATAAGAATGAACCACTTACAAATA TAACAAACCCCGAGCAACAGAGTTTAGTTCTTGGGGGGGAAGTATGCATGTGGGGAGAAACAGTGGATGGGTCAGACATTGAACAAACCATATGGCCACG TGCTGCAGCTGCTGCAGAGCGGCTATGGACACCTTATGACAAGCTAGCGAAGGATCCAGAAAAAGTTGCTGGAAGGTTAGCACACTTCAGGTGTTTGCTG AATCAAAGAGGGGTTGCCGCAGCTCCTTTAGCTGGACCAGGCCGAGGAGCACCTATAGAACCAGGTTCTTGTTATGGACAGTAA
AA sequence Show only first row Show all	>Potri.008G079400.2 pacid=42808566 polypeptide=Potri.008G079400.2.p locus=Potri.008G079400 ID=Potri.008G079400.2.v4.1 annot-version=v4.1 MGLKSAWLVVVFMFLGVAVAKNVNELNLWPMPKWVSRGHSRVYMSQDFQLVTDGSKYIDGSEILKDGFTRMLDVVKVAHVVDGDLSSVDKSLIIKGIHVL IFSPDDQLQYGVAESYKLLVPSPEMPDYVHLEAQTVYGALHGLQTFSQLCHFNFTTRLIEVHMVPWTIIDQPRFSYRGLLIDTSRHYQPVPMIKKVIDSM AYAKLNVLHWHIVDTQSFPLEIPSYPHLWDGAYSVSERYTFSDAAEIVSYAQRRGINVLAELDVPGHALSWGHGYPSLWPSKDCQQPLDVSNEFTFKVID GILSDFSKIFKFKFVHLGGDEVDPSCWTKTPHITKWLKEHRMNGSQAYQYFVLRAQKIALSHGFEIVNWEETFNDFRNKLSRKTVVHNWLGGGVAEQVVA SGLRCIVSNQDKWYLDHLDTPWEEFYKNEPLTNITNPEQQSLVLGGEVCMWGETVDGSDIEQTIWPRAAAAAERLWTPYDKLAKDPEKVAGRLAHFRCLL NQRGVAAAPLAGPGRGAPIEPGSCYGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Potri.008G079400 [exp]	0	1
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.005G111400 [exp]	2.00	0.8972
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Potri.014G077500 [exp]	2.23	0.9206
AT3G62630			Protein of unknown function (D...		Potri.005G019600 [exp]	5.00	0.8953
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Potri.001G082600 [exp]	5.47	0.8877
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066500 [exp]	5.74	0.8780
AT1G65900			unknown protein		Potri.017G139400 [exp]	5.83	0.8467
AT1G08590			Leucine-rich receptor-like pro...		Potri.013G048800 [exp]	6.70	0.9147
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.001G188500 [exp]	8.00	0.8679
AT3G49900			Phototropic-responsive NPH3 fa...		Potri.005G149400 [exp]	8.48	0.8818
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.001G278300 [exp]	8.71	0.8624

Compare expression of checked genes

Potri.008G079400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.